Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 8.8e-165 584.3 508 100.0
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.5e-127 460.7 515 78.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.0e-125 452.6 513 73.5
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.3e-96 357.8 513 67.6
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 6.7e-96 355.5 539 60.7
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.0e-93 346.3 534 68.2
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.2e-92 344.7 520 59.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.0e-92 344.0 540 60.7
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.6e-92 343.6 519 66.1
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.7e-91 340.9 512 65.2
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-90 338.2 518 62.9
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.2e-90 336.3 546 70.1
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.2e-90 336.3 524 64.5
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 2.1e-89 334.0 537 55.7
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 4.6e-89 332.8 516 67.8
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 3.0e-88 330.1 546 62.6
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.0e-88 330.1 517 65.6
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 5.1e-88 329.3 516 63.8
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.1e-87 328.2 527 67.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 4.3e-87 326.2 541 63.4
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 4.3e-87 326.2 424 75.0
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.7e-87 325.9 515 62.3
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 9.6e-87 325.1 511 61.1
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.3e-86 324.7 536 66.6
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 8.2e-86 322.0 538 51.9
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 5.3e-85 319.3 597 61.3
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 5.3e-85 319.3 524 68.1
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 6.9e-85 318.9 600 62.3
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.6e-84 317.0 597 61.5
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 4.5e-84 316.2 546 62.8
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 5.0e-83 312.8 510 60.0
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 2.1e-81 307.4 526 59.5
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.7e-81 307.0 520 63.7
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 3.5e-81 306.6 511 61.6
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 6.1e-81 305.8 513 61.6
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 7.9e-81 305.4 503 69.2
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.3e-80 303.9 427 67.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 3.0e-80 303.5 550 62.9
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.9e-80 303.1 520 64.2
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 4.3e-79 299.7 552 65.8
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.7e-79 299.3 413 66.1
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.7e-79 298.5 518 62.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.2e-78 297.4 430 68.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 3.7e-78 296.6 427 61.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 4.8e-78 296.2 466 60.5
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.4e-77 294.7 526 66.9
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.3e-77 292.7 513 62.4
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 9.0e-77 292.0 434 75.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.2e-76 291.6 424 70.8
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.5e-76 291.2 545 62.6
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.5e-76 291.2 407 59.2
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.9e-76 289.3 554 62.1
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.3e-75 288.1 450 63.8
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.2e-75 287.3 167 88.0
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.9e-75 287.0 535 60.9
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 3.8e-75 286.6 537 61.3
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 5.0e-75 286.2 164 89.6
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.5e-75 285.8 167 87.4
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.1e-74 285.0 159 90.6
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.1e-74 285.0 565 64.1
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.5e-74 283.9 163 87.1
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.5e-74 283.9 164 89.0
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.2e-74 283.5 515 61.7
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 3.2e-74 283.5 446 70.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 5.5e-74 282.7 518 62.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 7.2e-74 282.3 547 63.8
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 9.4e-74 282.0 560 58.6
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.4e-74 282.0 159 88.1
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.6e-73 281.2 432 69.9
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.6e-73 280.0 544 58.6
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.6e-73 280.0 426 74.2
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 4.6e-73 279.6 539 59.6
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.0e-72 278.5 421 63.9
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.8e-72 277.7 165 84.2
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.3e-72 277.3 423 62.4
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 8.8e-72 275.4 438 58.0
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.5e-71 274.6 512 62.3
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.3e-71 273.5 422 71.1
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 3.3e-71 273.5 519 54.7
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 7.4e-71 272.3 533 62.9
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 9.7e-71 271.9 531 59.5
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 9.7e-71 271.9 153 88.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.7e-70 271.2 512 54.5
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.7e-70 271.2 414 54.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.8e-70 270.4 164 83.5
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.8e-70 270.4 523 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 4.8e-70 269.6 165 84.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 6.3e-70 269.2 421 68.6
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.1e-69 268.5 402 69.9
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.8e-69 267.7 515 60.4
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.4e-69 267.3 424 70.3
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.4e-69 267.3 523 55.3
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 9.1e-69 265.4 164 85.4
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 9.1e-69 265.4 424 71.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.5e-68 264.6 568 57.9
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.0e-68 264.2 475 60.4
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 3.4e-68 263.5 421 71.0
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.4e-68 263.5 166 80.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 4.5e-68 263.1 161 82.6
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 4.5e-68 263.1 161 82.6
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 5.9e-68 262.7 417 60.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 2.2e-67 260.8 425 69.2
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 3.8e-67 260.0 519 64.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 5.0e-67 259.6 421 70.1
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 8.5e-67 258.8 407 69.8
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.4e-66 258.1 152 84.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.5e-66 256.1 164 79.9
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 7.2e-66 255.8 155 83.9
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.2e-65 255.0 163 81.0
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.2e-65 255.0 163 81.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.6e-65 254.6 154 85.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-65 254.6 166 78.3
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-65 253.8 167 78.4
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.7e-65 253.1 560 55.2
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.0e-64 250.4 158 81.6
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-63 248.1 418 58.6
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-63 247.7 419 60.6
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-63 246.5 155 81.9
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 4.4e-63 246.5 156 80.8
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-62 245.0 419 59.9
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.3e-62 245.0 421 67.7
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.7e-62 243.4 417 60.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 7.0e-61 239.2 418 59.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-60 238.4 133 88.0
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 2.6e-60 237.3 132 88.6
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-59 235.0 130 88.5
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-59 234.6 419 57.8
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-59 233.0 132 87.1
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 8.5e-59 232.3 164 75.0
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-57 228.4 417 56.8
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-57 228.0 160 75.6
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.6e-57 226.9 164 73.2
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-57 226.9 132 84.8
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.6e-57 226.9 161 75.2
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-56 224.9 164 72.6
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-56 224.9 164 72.6
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.3e-56 224.2 131 87.0
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 4.4e-55 219.9 417 41.0
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-55 219.9 416 50.2
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.7e-55 219.5 135 84.4
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 9.7e-55 218.8 417 57.6
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.2e-51 207.6 163 66.9
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.1e-49 201.1 382 64.9
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 2.8e-46 190.7 107 86.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 8.3e-46 189.1 157 65.6
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.1e-45 186.8 101 92.1
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 3.5e-44 183.7 153 66.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-43 181.0 118 80.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-42 177.6 132 72.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 8.0e-41 172.6 114 78.9
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 4.0e-40 170.2 106 81.1
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-39 168.7 103 80.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.3e-38 162.9 163 58.3
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 1.1e-34 152.1 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 3.6e-33 147.1 136 58.1
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 6.8e-32 142.9 84 83.3
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 4.4e-31 140.2 84 82.1
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 4.9e-30 136.7 71 95.8
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.0e-28 131.3 103 57.3
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 4.6e-28 130.2 155 51.0
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-27 127.9 85 74.1
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.9e-27 127.1 325 64.6
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 6.6e-27 126.3 85 72.9
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-23 112.5 68 80.9
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-22 110.5 67 80.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.7e-22 110.5 65 83.1
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 6.0e-20 103.2 56 92.9
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-19 102.1 68 76.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.6e-17 95.1 52 88.5
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.7e-17 93.6 524 39.9
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 8.9e-16 89.4 56 80.4
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.4e-13 82.0 89 51.7
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 4.1e-13 80.5 168 38.1
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 3.0e-11 74.3 90 52.2
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-11 73.6 91 49.5
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 2.3e-08 64.7 50 64.0
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.6e-07 61.2 87 46.0


User provided reference genes

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