Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1731.8 927 100.0
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1624.0 927 92.3
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1234.2 932 71.2
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1204.1 937 70.1
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1172.5 932 68.3
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1155.2 969 65.7
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1154.0 938 67.1
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1154.0 930 67.6
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1146.7 925 67.2
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1146.7 934 67.6
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1141.7 927 67.4
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1139.8 941 65.5
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1137.1 930 67.6
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1135.2 910 68.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1124.8 931 65.7
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1122.8 926 66.2
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1117.4 938 65.8
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1117.4 933 66.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1111.3 930 64.9
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1110.5 914 66.2
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1110.5 934 65.7
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1109.4 932 65.3
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1108.6 935 65.8
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1107.0 934 65.6
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1105.1 935 65.7
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1090.5 935 64.2
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 0.0e+00 1080.5 938 64.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1077.0 921 64.0
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 4.4e-311 1071.2 933 63.7
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.1e-309 1066.6 899 64.3
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 3.1e-309 1065.1 886 64.4
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 4.2e-306 1054.7 922 62.7
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 5.5e-306 1054.3 920 63.5
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 3.0e-304 1048.5 924 63.5
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 3.0e-304 1048.5 927 62.5
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 7.4e-303 1043.9 932 62.7
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 3.7e-302 1041.6 920 61.0
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 5.1e-296 1021.1 911 60.9
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 2.0e-295 1019.2 923 61.6
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 2.6e-295 1018.8 895 62.7
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.6e-295 1018.8 911 60.2
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 9.7e-295 1016.9 872 63.1
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.3e-294 1016.5 874 63.0
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.3e-294 1016.5 932 59.8
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 4.8e-294 1014.6 901 62.2
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.4e-293 1013.1 901 62.5
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.4e-293 1012.3 933 60.5
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 7.0e-293 1010.7 940 59.8
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 944 60.2
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 2.7e-289 998.8 914 59.4
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 6.1e-289 997.7 925 59.7
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 6.1e-289 997.7 937 58.3
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 1.0e-288 996.9 893 59.8
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.0e-288 995.3 927 58.0
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 4.0e-288 995.0 892 59.6
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.5e-287 993.0 971 58.4
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.5e-287 993.0 916 60.4
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 5.7e-287 991.1 871 60.4
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.3e-286 989.9 902 59.1
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.3e-286 989.9 869 60.9
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.1e-285 986.9 923 59.0
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 7.0e-285 984.2 896 60.5
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 4.5e-284 981.5 923 59.3
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.0e-283 980.3 896 59.9
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.0e-283 980.3 932 59.7
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 1.3e-283 979.9 896 60.0
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 1.3e-283 979.9 896 60.0
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 1.3e-283 979.9 934 59.6
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.9e-282 976.1 902 60.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.2e-282 974.9 925 57.9
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 4.7e-281 971.5 911 58.3
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.7e-278 963.0 899 58.6
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.7e-278 961.8 936 56.5
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 3.1e-277 958.7 876 58.2
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.7e-276 955.7 804 65.9
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 6.1e-273 944.5 870 59.8
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.5e-271 939.9 823 62.3
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.4e-271 938.3 921 56.2
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 7.5e-271 937.6 899 57.8
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.1e-269 933.7 945 56.3
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 1.6e-268 929.9 899 58.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 4.5e-268 928.3 752 65.3
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 1.7e-267 926.4 931 56.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 2.3e-264 916.0 805 63.0
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.9e-258 896.3 838 61.0
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.3e-251 873.6 863 56.7
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.9e-250 869.8 899 53.9
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.3e-248 862.8 946 53.5
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 6.8e-248 861.3 872 54.1
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 8.9e-240 834.3 664 67.3
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.3e-234 814.7 890 52.9
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 8.9e-232 807.7 871 53.2
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.5e-231 807.0 781 58.1
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 2.6e-231 806.2 804 61.2
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.7e-227 793.5 802 53.6
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.8e-216 756.9 550 71.1
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 6.9e-208 728.4 686 59.3
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 6.9e-192 675.2 552 63.9
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 2.3e-187 660.2 662 54.4
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 3.2e-181 639.8 887 42.5
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 7.9e-180 635.2 879 42.2
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.4e-179 634.4 894 41.5
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 4.8e-177 625.9 714 52.1
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 5.3e-176 622.5 895 41.1
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 4.1e-168 596.3 477 65.6
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 8.3e-145 518.8 873 39.3
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.4e-128 464.2 482 55.8
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 4.9e-113 413.3 425 57.2
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 7.3e-109 399.4 958 32.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.4e-106 390.6 926 30.9
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.4e-104 385.2 409 53.8
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.0e-102 379.0 309 63.8
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 3.1e-99 367.5 290 64.8
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.0e-94 352.4 986 28.9
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.0e-94 350.9 349 54.4
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.3e-86 324.7 452 47.6
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.3e-86 324.7 952 28.0
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-84 318.5 268 63.4
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 3.1e-83 314.3 354 55.9
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.7e-79 301.2 256 66.0
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 2.5e-77 294.7 164 95.1
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.7e-76 290.8 463 44.5
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.0e-74 285.0 192 79.7
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-73 282.7 218 67.0
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.3e-61 241.1 181 69.1
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 6.7e-54 216.9 396 40.4
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.3e-52 210.3 334 41.3
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.0e-50 205.3 270 44.1
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 4.2e-48 197.6 133 73.7
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 5.0e-41 174.1 135 65.2
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 3.7e-36 157.9 142 65.5
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-35 156.0 128 64.1
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.3e-32 144.8 179 44.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 8.3e-28 130.2 97 70.1
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 3.2e-27 128.3 117 60.7
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 4.1e-27 127.9 97 71.1
Sabra04G0115100 Salix brachista HOM05D005096 ORTHO05D349764 1.6e-23 115.9 135 51.1
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 3.0e-17 95.1 150 44.0
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.3e-16 91.3 63 74.6
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 7.3e-16 90.5 91 57.1
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.6e-15 88.2 170 39.4
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.4e-14 86.3 241 34.0
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.9e-14 83.6 48 81.2
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.6e-13 82.0 154 32.5
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 4.4e-13 81.3 101 48.5
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-12 79.3 76 64.5
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.4e-11 75.5 114 41.2
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 2.1e-10 72.4 52 65.4
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 8.6e-09 67.0 34 91.2


User provided reference genes

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