Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.8e-272 940.6 504 100.0
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.1e-247 858.2 523 90.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.7e-241 837.4 502 88.6
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-221 773.1 493 85.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 8.6e-221 770.4 503 82.3
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.8e-219 765.4 506 80.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 3.6e-219 765.0 494 81.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.5e-217 759.6 502 81.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 6.0e-214 747.7 503 78.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.5e-212 743.0 502 79.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.4e-210 736.5 503 79.3
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.8e-210 734.2 502 78.3
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.5e-209 733.0 502 77.9
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.5e-209 733.0 502 78.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 3.7e-208 728.4 493 79.9
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.4e-208 727.6 502 78.3
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.1e-207 726.9 503 78.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.4e-207 726.5 493 79.7
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.4e-207 724.5 502 78.1
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 3.5e-206 721.8 494 78.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 7.8e-206 720.7 502 76.5
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.8e-206 720.7 504 76.6
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.0e-205 720.3 495 78.8
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.0e-205 718.8 501 78.6
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.0e-205 718.8 502 77.7
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.9e-205 718.4 493 79.3
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 6.6e-205 717.6 502 76.7
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.1e-204 716.8 502 76.5
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.5e-204 715.7 499 76.8
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 7.3e-204 714.1 501 78.2
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.8e-203 712.2 481 80.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.8e-202 709.5 502 75.7
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-201 706.8 522 74.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.2e-201 706.8 502 75.9
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.2e-201 706.8 504 75.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.0e-201 706.1 502 76.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.6e-201 705.7 495 78.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 9.9e-201 703.7 499 76.4
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-199 700.3 502 75.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-199 699.5 532 72.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 9.3e-199 697.2 496 77.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 9.3e-199 697.2 495 77.8
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.7e-198 695.7 502 76.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 6.0e-198 694.5 494 77.5
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.0e-197 693.7 498 73.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.3e-197 692.6 489 75.1
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.5e-196 689.9 503 74.4
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.3e-196 688.7 504 73.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.6e-196 688.0 508 74.0
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 5.6e-196 688.0 503 74.0
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.6e-193 679.1 502 73.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.4e-193 678.7 501 74.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 4.5e-193 678.3 471 79.0
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 9.9e-193 677.2 499 73.9
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.7e-192 676.4 508 73.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.2e-192 676.0 439 81.5
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 4.9e-192 674.9 502 73.5
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 4.9e-192 674.9 491 74.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 7.1e-191 671.0 503 74.0
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.2e-190 670.2 502 72.5
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.7e-190 669.1 502 70.5
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.7e-190 669.1 486 75.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.3e-189 666.8 503 71.4
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.7e-189 664.1 472 76.7
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 9.6e-188 660.6 503 73.4
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 6.2e-187 657.9 499 71.7
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 8.1e-187 657.5 487 74.3
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.8e-186 656.4 495 72.3
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 6.9e-186 654.4 489 72.8
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 9.0e-186 654.1 502 70.7
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 9.0e-186 654.1 485 73.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.6e-185 652.5 495 72.1
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.4e-185 652.1 500 71.6
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 5.8e-185 651.4 499 71.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 4.9e-184 648.3 516 69.2
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 8.4e-184 647.5 495 71.5
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 8.4e-184 647.5 495 71.5
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.1e-183 647.1 501 73.3
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.4e-183 646.7 495 71.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-182 643.7 503 71.8
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.1e-182 642.9 495 70.7
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 6.0e-182 641.3 493 71.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.5e-180 636.0 500 69.6
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.1e-179 632.9 487 71.3
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.1e-179 632.9 487 71.0
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 4.8e-179 631.7 489 71.2
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 4.8e-179 631.7 497 70.2
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.8e-178 629.8 479 71.2
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.4e-178 629.4 502 69.1
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.6e-177 624.4 502 66.5
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.8e-176 622.1 423 79.0
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-176 621.3 524 68.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 8.4e-176 620.9 508 67.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 5.5e-175 618.2 498 66.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.2e-174 617.1 494 69.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 7.9e-174 614.4 495 69.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 1.3e-173 613.6 504 67.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 5.1e-173 611.7 518 65.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 3.3e-172 609.0 497 66.4
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.3e-165 587.0 438 73.3
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.3e-165 587.0 502 63.7
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.7e-163 578.9 506 63.8
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.4e-162 577.0 534 63.7
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.0e-161 573.2 383 80.4
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.4e-154 549.7 495 64.4
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.9e-153 545.0 356 80.9
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 6.5e-152 541.6 483 63.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 4.0e-141 505.8 485 59.2
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.4e-138 496.5 479 61.4
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.2e-137 494.2 502 57.8
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.3e-136 490.7 492 59.6
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.1e-134 483.4 456 61.4
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 9.8e-132 474.6 406 63.5
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.9e-129 465.3 396 68.9
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.9e-127 460.3 372 72.0
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 8.8e-125 451.4 451 56.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.5e-119 434.1 491 57.0
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 4.7e-110 402.5 381 63.3
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 4.7e-110 402.5 381 63.3
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.9e-95 354.0 209 85.2
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.2e-94 351.3 425 51.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 8.1e-94 348.6 268 73.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.3e-88 331.3 367 50.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.8e-86 323.6 324 53.7
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.7e-86 322.8 435 45.3
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-80 304.3 222 74.3
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.9e-79 300.8 221 72.4
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 5.3e-77 292.7 415 43.1
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.1e-62 244.2 202 68.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.1e-58 231.9 278 52.5
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.6e-57 228.0 387 38.5
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.3e-55 220.3 397 37.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.9e-52 209.5 358 37.4
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.3e-47 193.4 227 53.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.6e-44 184.1 132 74.2
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.2e-42 177.2 290 44.8
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-37 161.8 99 81.8
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 5.9e-36 156.4 95 85.3
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-34 152.1 110 67.3
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.8e-30 137.5 90 77.8
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 8.8e-24 115.9 141 49.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-21 108.2 122 52.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.8e-21 108.2 185 40.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.4e-21 107.8 98 56.1
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 9.8e-15 85.9 70 72.9
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-10 72.4 60 56.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-10 72.4 60 56.7
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 9.5e-10 69.3 64 64.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 6.1e-09 66.6 74 55.4
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-08 65.9 60 51.7
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 3.4e-07 60.8 50 74.0
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.7e-06 58.5 206 31.6
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.3e-06 56.6 32 87.5


User provided reference genes

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