Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 5.6e-93 344.4 184 100.0
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 6.4e-73 277.7 183 82.5
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 5.8e-66 254.6 183 79.2
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 6.6e-62 241.1 168 78.0
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.9e-61 239.6 184 76.1
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 1.3e-60 236.9 169 77.5
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.1e-60 236.1 187 72.2
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 9.0e-59 230.7 174 75.3
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.3e-57 226.9 174 74.7
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 6.4e-57 224.6 173 73.4
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 3.2e-56 222.2 184 69.6
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 5.4e-56 221.5 169 73.4
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 2.1e-55 219.5 161 75.8
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 3.9e-54 215.3 181 69.1
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.1e-53 213.8 180 67.2
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 1.1e-53 213.8 180 67.8
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 1.5e-53 213.4 178 69.7
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.5e-53 212.6 170 72.4
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.3e-53 211.8 172 71.5
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 7.3e-53 211.1 212 60.8
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 9.6e-53 210.7 181 68.5
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 9.6e-53 210.7 169 68.0
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 1.6e-52 209.9 173 68.8
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 1.6e-52 209.9 176 69.3
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.6e-52 209.9 172 72.7
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 2.8e-52 209.1 172 70.3
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 4.8e-52 208.4 171 71.9
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 8.1e-52 207.6 189 65.6
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 1.1e-51 207.2 189 65.6
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.1e-51 207.2 169 72.2
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 3.1e-51 205.7 168 69.0
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 6.9e-51 204.5 175 69.7
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 2.6e-50 202.6 184 65.8
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 3.4e-50 202.2 184 67.4
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 4.5e-50 201.8 167 71.3
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 7.6e-50 201.1 164 69.5
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 9.9e-50 200.7 187 66.3
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 9.9e-50 200.7 184 63.0
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 1.7e-49 199.9 178 68.0
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 1.7e-49 199.9 168 69.6
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 2.2e-49 199.5 188 63.8
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 2.9e-49 199.1 149 76.5
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 2.9e-49 199.1 168 67.9
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 3.8e-49 198.7 169 69.2
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 7.1e-48 194.5 187 66.8
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 7.1e-48 194.5 182 64.3
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 9.3e-48 194.1 164 70.1
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 1.2e-47 193.7 131 80.9
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.1e-47 193.0 189 64.0
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 2.1e-47 193.0 182 63.7
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 2.1e-47 193.0 190 66.3
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 2.1e-47 193.0 150 72.0
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.7e-47 192.6 176 64.8
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 2.7e-47 192.6 182 63.7
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 7.9e-47 191.0 181 65.2
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.0e-46 190.7 158 69.6
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 2.3e-46 189.5 178 64.0
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 8.7e-46 187.6 126 82.5
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 1.1e-45 187.2 182 63.7
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.9e-45 186.4 181 64.6
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 2.5e-45 186.0 185 62.2
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 2.5e-45 186.0 185 62.2
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 2.5e-45 186.0 185 62.2
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 2.5e-45 186.0 170 64.7
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.6e-44 183.3 148 75.0
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 2.8e-44 182.6 183 62.8
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 2.8e-44 182.6 194 59.3
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 2.8e-44 182.6 177 64.4
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 1.1e-43 180.6 118 81.4
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 3.1e-43 179.1 170 61.8
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 5.3e-43 178.3 191 60.2
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.6e-42 176.0 162 64.2
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 5.8e-42 174.9 158 63.9
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.0e-41 174.1 190 58.4
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.3e-41 173.7 145 70.3
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.7e-41 173.3 126 76.2
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 2.9e-41 172.6 190 60.5
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 8.4e-41 171.0 191 60.2
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 8.4e-41 171.0 177 61.6
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 2.5e-40 169.5 121 79.3
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.2e-39 167.2 148 66.2
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 2.1e-39 166.4 151 68.9
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 2.1e-39 166.4 123 76.4
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 2.7e-39 166.0 146 69.9
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 2.7e-39 166.0 182 56.6
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 4.6e-39 165.2 173 63.0
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 7.9e-39 164.5 185 55.7
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 3.9e-38 162.2 179 59.2
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 2.1e-36 156.4 99 82.8
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 3.7e-36 155.6 180 53.3
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 3.7e-36 155.6 180 53.3
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.1e-35 154.1 100 79.0
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 2.0e-34 149.8 168 57.7
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 5.0e-33 145.2 168 56.5
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 8.4e-33 144.4 88 86.4
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.3e-30 137.1 162 53.7
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 3.9e-30 135.6 124 63.7
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 1.6e-28 130.2 166 51.8
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 1.6e-28 130.2 150 54.0
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.1e-27 125.6 108 66.7
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 2.6e-26 122.9 174 48.9
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 1.7e-25 120.2 162 48.1
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.2e-25 119.8 98 69.4
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 8.5e-25 117.9 120 57.5
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.4e-24 117.1 79 79.7
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 2.7e-23 112.8 125 55.2
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.9e-22 109.0 82 75.6
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.9e-22 109.0 82 75.6
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.3e-17 94.0 150 42.0
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 2.5e-16 89.7 145 40.7
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.5e-16 89.7 97 57.7
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 1.2e-15 87.4 81 60.5
Duzib130G0001 Durio zibethinus HOM05D006899 ORTHO05D008566 1.0e-14 84.3 69 69.6
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.4e-14 84.0 120 41.7
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 3.1e-11 72.8 91 46.2
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 1.5e-08 63.9 70 42.9


User provided reference genes

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