Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 4.5e-164 581.3 303 100.0
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 4.7e-97 358.6 208 84.1
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.6e-71 273.1 304 51.6
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 4.6e-68 262.3 297 48.5
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.1e-64 251.1 254 53.5
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 1.6e-60 237.3 251 51.4
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 8.7e-59 231.5 241 50.6
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 1.2e-57 227.6 257 51.8
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 5.2e-56 222.2 301 43.9
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 4.4e-55 219.2 254 49.2
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 4.4e-55 219.2 248 48.0
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 7.6e-55 218.4 236 51.3
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 7.6e-55 218.4 303 43.2
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 9.9e-55 218.0 250 51.2
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.4e-53 214.2 258 47.7
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 1.4e-53 214.2 248 49.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.2e-52 211.1 258 46.9
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 6.0e-52 208.8 253 49.4
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.0e-51 208.0 251 45.0
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 1.3e-51 207.6 254 44.5
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.7e-51 207.2 273 41.8
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 2.3e-51 206.8 259 44.8
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 3.0e-51 206.5 255 47.5
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 5.1e-51 205.7 268 47.8
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.5e-50 204.1 236 45.8
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 3.3e-50 203.0 253 47.4
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 4.3e-50 202.6 278 45.3
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 7.3e-50 201.8 251 45.0
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 9.6e-50 201.4 275 44.7
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 1.3e-49 201.1 256 43.4
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.1e-49 200.3 239 45.2
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.6e-49 199.5 250 45.6
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 8.1e-49 198.4 269 44.2
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 1.4e-48 197.6 249 42.6
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.1e-48 196.4 232 50.9
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 4.0e-48 196.1 251 47.0
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 5.3e-48 195.7 250 44.8
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 5.3e-48 195.7 250 44.8
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 1.2e-47 194.5 260 45.0
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 2.6e-47 193.4 253 43.5
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 4.5e-47 192.6 268 40.7
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 4.5e-47 192.6 254 46.5
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.2e-46 190.3 250 43.2
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 3.8e-46 189.5 288 45.1
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 8.4e-46 188.3 256 39.8
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 3.2e-45 186.4 248 43.1
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 3.2e-45 186.4 248 44.0
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 3.5e-44 183.0 270 41.9
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.0e-43 181.4 270 41.5
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 1.3e-43 181.0 257 45.5
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 3.3e-42 176.4 306 38.2
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 7.4e-42 175.3 263 41.1
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 2.4e-37 160.2 246 39.4
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.2e-37 159.8 256 37.5
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 6.0e-36 155.6 302 36.8
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 7.9e-36 155.2 249 39.0
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.3e-35 154.5 178 48.9
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 3.0e-35 153.3 176 47.2
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 5.1e-35 152.5 259 34.7
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 6.7e-35 152.1 255 38.8
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.1e-34 151.4 303 35.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.1e-34 151.4 259 36.7
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 3.3e-34 149.8 197 47.7
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 4.3e-34 149.4 200 41.5
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 5.6e-34 149.1 249 36.9
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 7.4e-34 148.7 225 40.4
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.3e-33 147.9 238 39.5
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 3.7e-33 146.4 251 38.2
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 3.7e-33 146.4 169 51.5
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 8.2e-33 145.2 255 35.3
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.1e-32 144.8 250 35.6
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 5.3e-32 142.5 233 36.5
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.5e-31 141.0 233 36.1
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 2.0e-31 140.6 234 35.5
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 3.4e-31 139.8 197 40.1
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 4.5e-31 139.4 222 37.8
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 4.5e-31 139.4 222 37.8
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 2.9e-30 136.7 258 32.9
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.9e-29 134.0 250 38.4
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 3.0e-27 126.7 148 45.9
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.5e-26 124.4 250 30.8
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 2.4e-24 117.1 247 30.8
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.3e-22 111.3 229 28.8
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 8.5e-22 108.6 270 30.0
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.4e-21 107.8 162 39.5
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.4e-21 107.8 255 28.2
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 6.1e-20 102.4 124 43.5
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 3.9e-19 99.8 155 38.7
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 3.1e-16 90.1 120 45.0
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 2.7e-12 77.0 117 35.9
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 5.1e-11 72.8 90 44.4
MD10G1098800 Malus domestica HOM05D001524 ORTHO05D001392 3.3e-10 70.1 215 27.4
MD10G1147400 Malus domestica HOM05D001524 ORTHO05D001392 7.4e-10 68.9 208 26.9
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 7.4e-10 68.9 288 26.7
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.3e-09 68.2 236 25.8
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 2.2e-09 67.4 235 24.3
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 6.3e-09 65.9 199 26.1
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 6.3e-09 65.9 241 24.9
Lj9P323T45 Lonicera japonica HOM05D001524 ORTHO05D001392 8.2e-09 65.5 215 27.0
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 1.1e-08 65.1 223 24.2
AUR62010322 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.4e-08 64.7 242 25.6
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 1.4e-08 64.7 226 23.9
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 1.4e-08 64.7 239 25.5
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 1.8e-08 64.3 243 25.5
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 1.8e-08 64.3 239 24.7
Ah.01g018320 Amaranthus hybridus HOM05D001524 ORTHO05D001392 2.4e-08 63.9 241 23.7
Carub.0003s2906 Capsella rubella HOM05D001524 ORTHO05D001392 2.4e-08 63.9 208 26.0
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 2.4e-08 63.9 240 24.2
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 3.1e-08 63.5 210 25.7
Sopen01g049740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-08 63.5 216 26.4
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 5.3e-08 62.8 214 25.7
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 5.3e-08 62.8 236 25.4
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 7.0e-08 62.4 240 24.2
Hma1.2p1_3964F.1_g338080 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 7.0e-08 62.4 134 27.6
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 9.1e-08 62.0 236 23.7
AUR62039065 Chenopodium quinoa HOM05D001524 ORTHO05D001392 9.1e-08 62.0 250 24.0
Hma1.2p1_0796F.1_g219310 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 9.1e-08 62.0 231 22.9
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 9.1e-08 62.0 223 25.1
Lj9C324T0 Lonicera japonica HOM05D001524 ORTHO05D001392 9.1e-08 62.0 209 25.4
Prupe.8G136200 Prunus persica HOM05D001524 ORTHO05D001392 9.1e-08 62.0 214 26.2
Ah.01g018330 Amaranthus hybridus HOM05D001524 ORTHO05D001392 1.2e-07 61.6 156 27.6
Nitab4.5_0026736g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.2e-07 61.6 141 29.1
Migut.B00394 Erythranthe guttata HOM05D001524 ORTHO05D001392 1.5e-07 61.2 242 24.4
Prupe.8G136100 Prunus persica HOM05D001524 ORTHO05D001392 1.5e-07 61.2 234 25.2
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 1.5e-07 61.2 210 25.2
AT2G15220 Arabidopsis thaliana HOM05D001524 ORTHO05D001392 2.0e-07 60.8 208 24.5
CARHR105610 Cardamine hirsuta HOM05D001524 ORTHO05D001392 2.0e-07 60.8 221 24.4
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 2.0e-07 60.8 214 25.7
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 3.4e-07 60.1 208 23.6
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 3.4e-07 60.1 224 25.4
AUR62010321 Chenopodium quinoa HOM05D001524 ORTHO05D001392 4.5e-07 59.7 218 23.9
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 4.5e-07 59.7 230 22.2
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 4.5e-07 59.7 240 22.5
Lsat_1_v5_gn_9_112561 Lactuca sativa HOM05D001524 ORTHO05D001392 4.5e-07 59.7 208 23.1
SalBow6G5621 Salvia bowleyana HOM05D001524 ORTHO05D001392 4.5e-07 59.7 225 22.2
ClCG02G006440 Citrullus lanatus HOM05D001524 ORTHO05D001392 5.9e-07 59.3 194 24.2
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 7.7e-07 58.9 207 23.7
Lalb_Chr21g0308301 Lupinus albus HOM05D001524 ORTHO05D001392 7.7e-07 58.9 208 25.5
Oeu037254.1 Olea europaea HOM05D001524 ORTHO05D001392 7.7e-07 58.9 229 23.1
Sabra16G0188000 Salix brachista HOM05D001524 ORTHO05D001392 7.7e-07 58.9 242 23.6
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.0e-06 58.5 207 24.2
HanXRQChr10g0295791 Helianthus annuus HOM05D001524 ORTHO05D001392 1.0e-06 58.5 242 24.0
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 1.0e-06 58.5 234 22.6
TPR.G3271 Trifolium pratense HOM05D001524 ORTHO05D001392 1.0e-06 58.5 208 25.0
Glyma.20G130000 Glycine max HOM05D001524 ORTHO05D001392 1.3e-06 58.2 215 23.3
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 1.3e-06 58.2 226 23.5
Solyc01g107540.4 Solanum lycopersicum HOM05D001524 ORTHO05D001392 1.3e-06 58.2 244 23.4
PGSC0003DMG400025765 Solanum tuberosum HOM05D001524 ORTHO05D001392 1.3e-06 58.2 208 23.6
Zm00001eb044960 Zea mays HOM05D001524 ORTHO05D001392 1.3e-06 58.2 205 24.4
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 1.7e-06 57.8 136 25.7
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.7e-06 57.8 224 23.2
SMO229G0032 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 1.7e-06 57.8 247 25.1
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 2.2e-06 57.4 231 22.9
Peaxi162Scf00016g02429 Petunia axillaris HOM05D001524 ORTHO05D001392 2.2e-06 57.4 241 24.1
CiPaw.05G012800 Carya illinoinensis HOM05D001524 ORTHO05D001392 2.9e-06 57.0 171 26.3
Migut.B00395 Erythranthe guttata HOM05D001524 ORTHO05D001392 2.9e-06 57.0 190 27.4
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.8e-06 56.6 189 24.9
Atru.chr5.2558 Acer truncatum HOM05D001524 ORTHO05D001392 5.0e-06 56.2 235 23.0
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 5.0e-06 56.2 134 26.1
PGR042G1781 Punica granatum HOM05D001524 ORTHO05D001392 5.0e-06 56.2 199 26.6
Sabra09G0073000 Salix brachista HOM05D001524 ORTHO05D001392 5.0e-06 56.2 234 23.9
ECA240G3852 Erigeron canadensis HOM05D001524 ORTHO05D001392 6.5e-06 55.8 174 24.7
Nitab4.5_0001143g0050 Nicotiana tabacum HOM05D001524 ORTHO05D001392 6.5e-06 55.8 240 22.5
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 8.5e-06 55.5 211 24.6
Potri.001G299400 Populus trichocarpa HOM05D001524 ORTHO05D001392 8.5e-06 55.5 242 23.6


User provided reference genes

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