Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.2e-84 315.1 164 100.0
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.2e-72 275.8 195 75.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.2e-68 261.9 197 71.1
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 8.0e-59 230.7 199 60.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 2.6e-57 225.7 194 61.3
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 2.2e-56 222.6 197 57.4
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.1e-55 220.3 195 58.5
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.4e-55 219.9 195 57.9
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.6e-54 216.5 197 56.9
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.7e-54 215.7 196 57.1
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 2.7e-54 215.7 196 56.6
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 5.9e-54 214.5 195 57.9
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.7e-53 213.0 196 57.1
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.8e-53 211.8 197 56.9
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 6.5e-53 211.1 195 56.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 6.5e-53 211.1 197 56.9
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.1e-52 210.3 196 56.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.9e-52 209.5 199 54.3
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 3.3e-52 208.8 195 56.4
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 7.2e-52 207.6 195 54.9
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 9.5e-52 207.2 195 56.9
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 9.5e-52 207.2 196 55.1
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 8.0e-51 204.1 199 55.3
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 8.0e-51 204.1 197 55.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.4e-50 203.4 195 54.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 5.2e-50 201.4 197 50.8
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.8e-50 201.1 207 52.7
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 6.8e-50 201.1 196 52.6
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.5e-49 199.9 197 50.3
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.5e-49 199.9 197 52.8
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 4.4e-49 198.4 200 51.5
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 5.7e-49 198.0 195 51.8
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.3e-48 196.8 195 56.9
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.2e-48 196.1 197 50.8
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.8e-48 195.7 197 51.8
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.7e-48 195.3 196 52.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 6.3e-48 194.5 195 51.8
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.4e-47 193.4 195 51.3
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.8e-47 193.0 197 49.7
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-47 192.6 196 48.5
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-47 192.6 196 48.5
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 2.4e-47 192.6 196 48.5
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 3.1e-47 192.2 195 53.3
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.1e-47 192.2 189 54.0
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 4.1e-47 191.8 201 49.3
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 5.4e-47 191.4 196 48.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 7.0e-47 191.0 196 50.5
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 9.2e-47 190.7 196 51.0
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 9.2e-47 190.7 194 53.1
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.0e-46 189.5 197 49.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.5e-46 188.7 195 49.7
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 5.9e-46 188.0 197 50.3
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 7.8e-46 187.6 216 45.8
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.3e-45 186.8 196 52.0
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.9e-44 183.0 195 47.7
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.9e-44 183.0 187 49.2
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-43 179.9 195 47.7
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 3.6e-43 178.7 191 47.1
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.4e-42 176.8 190 49.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.8e-42 176.4 197 45.2
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 5.2e-42 174.9 223 44.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 3.4e-41 172.2 197 49.7
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.4e-41 172.2 180 49.4
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.3e-40 170.2 197 46.2
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.9e-40 169.1 208 43.3
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.7e-40 168.7 195 45.1
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 3.7e-40 168.7 194 47.9
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 6.4e-40 167.9 194 46.4
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.6e-38 163.3 164 54.3
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 3.5e-38 162.2 166 51.8
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 4.6e-38 161.8 164 54.3
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.9e-37 158.7 192 44.8
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 6.6e-37 157.9 182 48.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 8.6e-37 157.5 192 44.8
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.9e-36 156.4 192 44.3
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.5e-36 156.0 192 44.3
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 4.3e-36 155.2 196 43.9
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 5.6e-36 154.8 192 43.8
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 5.6e-36 154.8 192 43.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 5.6e-36 154.8 192 44.3
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 7.3e-36 154.5 194 44.8
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.2e-35 153.7 192 43.2
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.2e-35 153.7 192 43.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-35 153.7 195 39.0
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.2e-35 153.7 164 54.9
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 8.0e-35 151.0 194 43.3
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.1e-34 149.1 167 50.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.8e-34 147.9 198 41.9
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.0e-33 146.4 198 41.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 9.8e-33 144.1 109 60.6
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 6.4e-32 141.4 126 59.5
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.9e-31 139.8 118 55.1
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 3.2e-31 139.0 194 42.8
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 4.1e-31 138.7 105 61.0
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.3e-29 132.9 108 59.3
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.0e-29 132.5 111 56.8
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 3.9e-29 132.1 251 36.3
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-28 130.6 195 36.9
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.6e-27 126.7 196 40.3
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-27 126.3 191 36.1
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.1e-27 124.4 196 37.2
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 5.2e-26 121.7 150 46.0
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 6.8e-26 121.3 191 36.6
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 3.4e-25 119.0 105 53.3
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 9.9e-25 117.5 139 47.5
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.2e-24 116.3 195 35.4
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.9e-24 115.2 106 51.9
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 6.4e-24 114.8 189 34.9
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-23 113.6 189 38.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.4e-23 112.8 109 53.2
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-23 112.1 191 36.6
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-22 110.2 191 37.2
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 4.6e-22 108.6 190 36.8
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 3.0e-21 105.9 118 44.9
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.6e-21 104.4 115 45.2
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-20 104.0 186 34.9
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.9e-20 103.2 183 36.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-20 102.4 112 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 9.5e-20 100.9 105 46.7
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 5.8e-17 91.7 103 46.6
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.1e-15 87.4 105 43.8
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.2e-15 85.5 55 72.7
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-14 84.0 72 54.2
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-14 84.0 161 30.4
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.5e-14 82.4 160 33.8
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.3e-13 80.5 81 50.6
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 3.9e-13 79.0 77 51.9
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 5.1e-13 78.6 107 42.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.8e-10 70.1 106 38.7
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.4e-10 69.7 72 43.1
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 9.0e-10 67.8 78 47.4
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 4.4e-09 65.5 114 33.3
Lsat_1_v5_gn_0_17861 Lactuca sativa HOM05D001315 ORTHO05D004199 1.4e-07 60.5 99 37.4
Lsat_1_v5_gn_3_119040 Lactuca sativa HOM05D001315 ORTHO05D004199 1.4e-07 60.5 99 37.4
Lsat_1_v5_gn_5_83661 Lactuca sativa HOM05D001315 ORTHO05D004199 1.4e-07 60.5 99 37.4
Lsat_1_v5_gn_6_73040 Lactuca sativa HOM05D000069 ORTHO05D022851 1.4e-07 60.5 99 37.4
Lsat_1_v5_gn_8_139980 Lactuca sativa HOM05D001315 ORTHO05D004199 1.4e-07 60.5 99 37.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 9.3e-07 57.8 37 67.6
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 6.0e-06 55.1 42 61.9


User provided reference genes

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