Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G198400 Populus trichocarpa HOM05D007043 ORTHO05D008951 6.1e-103 377.5 188 100.0
Ciclev10002599m.g Citrus clementina HOM05D007043 ORTHO05D008951 2.8e-84 315.5 188 83.0
Atru.chr13.1985 Acer truncatum HOM05D007043 ORTHO05D008951 4.8e-84 314.7 189 81.5
Duzib093G0431 Durio zibethinus HOM05D007043 ORTHO05D008951 5.9e-82 307.8 188 80.9
Gohir.A06G112300 Gossypium hirsutum HOM05D007043 ORTHO05D008951 1.0e-81 307.0 188 78.2
Cfa018265 Carpinus fangiana HOM05D007043 ORTHO05D008951 1.1e-80 303.5 194 75.8
ClCG08G007230 Citrullus lanatus HOM05D007043 ORTHO05D008951 1.1e-80 303.5 188 76.1
Aqoxy5G02008 Aquilegia oxysepala HOM05D007043 ORTHO05D008951 1.9e-80 302.8 188 77.1
Thecc.08G163200 Theobroma cacao HOM05D007043 ORTHO05D008951 3.2e-80 302.0 188 79.3
CiPaw.15G011600 Carya illinoinensis HOM05D007043 ORTHO05D008951 4.2e-80 301.6 187 79.1
Sed0011039 Sechium edule HOM05D007043 ORTHO05D008951 4.2e-80 301.6 186 75.8
Eucgr.F02676 Eucalyptus grandis HOM05D007043 ORTHO05D008951 7.2e-80 300.8 190 73.7
TAR625G0503 Trochodendron aralioides HOM05D007043 ORTHO05D008951 7.2e-80 300.8 188 75.5
Gohir.D06G116500 Gossypium hirsutum HOM05D007043 ORTHO05D008951 3.6e-79 298.5 188 76.1
Gorai.010G134300 Gossypium raimondii HOM05D007043 ORTHO05D008951 3.6e-79 298.5 188 76.1
RcHm_v2.0_Chr6g0273931 Rosa chinensis HOM05D007043 ORTHO05D008951 3.6e-79 298.5 185 77.8
Prupe.8G043500 Prunus persica HOM05D007043 ORTHO05D008951 4.7e-79 298.1 188 75.5
Haze_17823 Corylus avellana HOM05D007043 ORTHO05D008951 6.1e-79 297.7 187 77.0
CsaV3_6G004900 Cucumis sativus L. HOM05D007043 ORTHO05D008951 1.0e-78 297.0 188 75.5
arahy.Tifrunner.gnm1.ann1.T4LNKK Arachis hypogaea HOM05D007043 ORTHO05D008951 1.8e-78 296.2 188 74.5
MELO3C019966.2 Cucumis melo HOM05D007043 ORTHO05D008951 1.8e-78 296.2 188 75.0
QL02p036540 Quercus lobata HOM05D007043 ORTHO05D008951 1.8e-78 296.2 194 75.3
QL02p037061 Quercus lobata HOM05D007043 ORTHO05D008951 1.8e-78 296.2 193 75.6
MD10G1037900 Malus domestica HOM05D007043 ORTHO05D008951 4.0e-78 295.0 190 75.3
GSVIVG01013701001 Vitis vinifera HOM05D007043 ORTHO05D008951 5.2e-78 294.7 186 73.7
FAN15G1248 Fragaria x ananassa HOM05D007043 ORTHO05D008951 6.7e-78 294.3 185 76.2
FAN20G1550 Fragaria x ananassa HOM05D007043 ORTHO05D008951 6.7e-78 294.3 185 76.2
arahy.Tifrunner.gnm1.ann1.7K1R9Z Arachis hypogaea HOM05D007043 ORTHO05D008951 8.8e-78 293.9 188 74.5
FAN24G2827 Fragaria x ananassa HOM05D007043 ORTHO05D008951 8.8e-78 293.9 185 76.2
Peaxi162Scf00360g00918 Petunia axillaris HOM05D007043 ORTHO05D008951 2.0e-77 292.7 189 74.6
Phvul.007G084700 Phaseolus vulgaris HOM05D007043 ORTHO05D008951 4.4e-77 291.6 188 71.8
A07p37900 Brassica napus HOM05D007043 ORTHO05D008951 5.7e-77 291.2 186 74.7
Hma1.2p1_0678F.1_g202140 Hydrangea macrophylla HOM05D007043 ORTHO05D008951 7.5e-77 290.8 191 74.3
SHI09106 Sapria himalayana HOM05D007043 ORTHO05D008951 7.5e-77 290.8 186 73.7
Glyma.20G171100 Glycine max HOM05D007043 ORTHO05D008951 9.7e-77 290.4 186 73.7
unitig_52.g17176 Utricularia gibba HOM05D007043 ORTHO05D008951 9.7e-77 290.4 186 73.7
Glyma.10G220400 Glycine max HOM05D007043 ORTHO05D008951 1.3e-76 290.0 186 73.7
BcaC08g46601 Brassica carinata HOM05D007043 ORTHO05D008951 1.7e-76 289.7 186 74.7
C06p45800 Brassica napus HOM05D007043 ORTHO05D008951 1.7e-76 289.7 186 74.7
Cc10_g06450 Coffea canephora HOM05D007043 ORTHO05D008951 2.2e-76 289.3 194 73.7
CAN.G1183.21 Capsicum annuum HOM05D007043 ORTHO05D008951 2.8e-76 288.9 201 71.1
Cpa.g.sc26.119 Carica papaya HOM05D007043 ORTHO05D008951 3.7e-76 288.5 188 73.9
MD05G1035600 Malus domestica HOM05D007043 ORTHO05D008951 1.8e-75 286.2 190 74.2
TWI60G1299 Tripterygium wilfordii HOM05D007043 ORTHO05D008951 1.8e-75 286.2 184 75.0
CDE05G0687 Ceratophyllum demersum HOM05D007043 ORTHO05D008951 2.4e-75 285.8 187 71.7
Migut.N02945 Erythranthe guttata HOM05D007043 ORTHO05D008951 5.3e-75 284.6 188 73.4
Medtr1g097460 Medicago truncatula HOM05D007043 ORTHO05D008951 5.3e-75 284.6 188 71.8
VMungo0720G3009 Vigna mungo HOM05D007043 ORTHO05D008951 7.0e-75 284.3 187 71.1
PSO170G2334 Papaver somniferum HOM05D007043 ORTHO05D008951 9.1e-75 283.9 192 69.3
SalBow6G0078 Salvia bowleyana HOM05D007043 ORTHO05D008951 1.2e-74 283.5 188 72.9
Solyc04g072039.1 Solanum lycopersicum HOM05D007043 ORTHO05D008951 1.2e-74 283.5 198 69.2
ATR1120G076 Amborella trichopoda HOM05D007043 ORTHO05D008951 2.0e-74 282.7 188 70.7
Sopen04g028120 Solanum pennellii HOM05D007043 ORTHO05D008951 2.7e-74 282.3 198 69.7
CSS0028309 Camellia sinensis var. sinensis HOM05D007043 ORTHO05D008951 4.5e-74 281.6 191 73.8
Lj5g0012506 Lotus japonicus HOM05D007043 ORTHO05D008951 4.5e-74 281.6 183 72.7
BolC6t39632H Brassica oleracea HOM05D007043 ORTHO05D008951 5.9e-74 281.2 197 70.6
Thhalv10019190m.g Eutrema salsugineum HOM05D007043 ORTHO05D008951 5.9e-74 281.2 186 73.7
TAR625G0569 Trochodendron aralioides HOM05D007043 ORTHO05D008951 5.9e-74 281.2 188 72.3
PGSC0003DMG400025055 Solanum tuberosum HOM05D007043 ORTHO05D008951 1.0e-73 280.4 200 69.0
Aa31LG4G8890 Aethionema arabicum HOM05D007043 ORTHO05D008951 1.3e-73 280.0 188 72.3
CSS0014664 Camellia sinensis var. sinensis HOM05D007043 ORTHO05D008951 1.3e-73 280.0 191 73.3
Nitab4.5_0003178g0080 Nicotiana tabacum HOM05D007043 ORTHO05D008951 1.3e-73 280.0 193 72.0
THA.LOC104800095 Tarenaya hassleriana HOM05D007043 ORTHO05D008951 1.3e-73 280.0 183 72.7
Carub.0002s1851 Capsella rubella HOM05D007043 ORTHO05D008951 6.5e-73 277.7 186 71.0
PSO210G5925 Papaver somniferum HOM05D007043 ORTHO05D008951 6.5e-73 277.7 192 67.7
CARHR291040 Cardamine hirsuta HOM05D007043 ORTHO05D008951 8.5e-73 277.3 186 71.5
BraA07t31355Z Brassica rapa HOM05D007043 ORTHO05D008951 1.1e-72 276.9 193 69.9
Lalb_Chr02g0141621 Lupinus albus HOM05D007043 ORTHO05D008951 1.9e-72 276.2 184 70.7
AL2G31320 Arabidopsis lyrata HOM05D007043 ORTHO05D008951 5.5e-72 274.6 186 71.5
Psat6g189600 Pisum sativum HOM05D007043 ORTHO05D008951 1.2e-71 273.5 183 70.5
vmacro21135 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 3.6e-71 271.9 192 71.9
vmacro22650 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 3.6e-71 271.9 192 71.9
AUR62034911 Chenopodium quinoa HOM05D007043 ORTHO05D008951 1.4e-70 270.0 186 69.4
Os05g0182201 Oryza sativa ssp. japonica HOM05D007043 ORTHO05D008951 1.4e-70 270.0 183 67.8
HanXRQChr11g0320161 Helianthus annuus HOM05D007043 ORTHO05D008951 1.8e-70 269.6 190 69.5
DCAR_016685 Daucus carota HOM05D007043 ORTHO05D008951 4.0e-70 268.5 177 67.8
SGA_v2.0_scaffold364G49970 Striga asiatica HOM05D007043 ORTHO05D008951 4.0e-70 268.5 187 69.5
AT1G71750 Arabidopsis thaliana HOM05D007043 ORTHO05D008951 1.2e-69 266.9 197 68.0
HPP92_024076 Vanilla planifolia HOM05D007043 ORTHO05D008951 1.2e-69 266.9 187 68.4
ECA232G2240 Erigeron canadensis HOM05D007043 ORTHO05D008951 3.4e-69 265.4 186 66.7
Hund26674 Selenicereus undatus HOM05D007043 ORTHO05D008951 3.4e-69 265.4 184 67.4
Ah.05g168310 Amaranthus hybridus HOM05D007043 ORTHO05D008951 3.7e-68 261.9 188 69.7
vmacro21134 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 3.7e-68 261.9 216 65.3
AUR62026618 Chenopodium quinoa HOM05D007043 ORTHO05D008951 1.4e-67 260.0 184 68.5
Manes.18G095900 Manihot esculenta HOM05D007043 ORTHO05D008951 2.4e-67 259.2 155 83.9
vmacro22651 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 4.1e-67 258.5 202 68.3
Ca_10649_v3 Cicer arietinum L. HOM05D007043 ORTHO05D008951 5.4e-67 258.1 178 69.1
MBI04_g42205_MAGBIO Magnolia biondii HOM05D007043 ORTHO05D008951 2.0e-66 256.1 260 52.3
EL10Ac8g19385 Beta vulgaris HOM05D007043 ORTHO05D008951 8.0e-63 244.2 189 64.6
PGR042G2421 Punica granatum HOM05D007043 ORTHO05D008951 4.4e-61 238.4 153 71.9
Actinidia15616 Actinidia chinensis HOM05D007043 ORTHO05D008951 2.8e-60 235.7 155 75.5
Nn5g28865 Nelumbo nucifera HOM05D007043 ORTHO05D008951 3.7e-60 235.3 155 72.9
Lsat_1_v5_gn_9_42421 Lactuca sativa HOM05D007043 ORTHO05D008951 8.3e-60 234.2 188 65.4
Nitab4.5_0003443g0050 Nicotiana tabacum HOM05D007043 ORTHO05D008951 8.3e-60 234.2 154 73.4
Dinv41024 Davidia involucrata HOM05D007043 ORTHO05D008951 1.8e-59 233.0 156 73.1
FvH4_2g12860 Fragaria vesca HOM05D007043 ORTHO05D008951 4.5e-58 228.4 159 71.1
Mapoly0053s0101 Marchantia polymorpha HOM05D007043 ORTHO05D008951 1.6e-55 219.9 182 58.2
SMO011G0020 Selaginella moellendorffii HOM05D007043 ORTHO05D008951 6.1e-55 218.0 185 57.8
CANSAT25G3234 Cannabis sativa HOM05D007043 ORTHO05D008951 8.0e-55 217.6 153 69.9
AagrBONN_evm.TU.Sc2ySwM_228.3072 Anthoceros agrestis HOM05D007043 ORTHO05D008951 9.8e-53 210.7 177 57.1
Sc26g0002900 Simmondsia chinensis HOM05D007043 ORTHO05D008951 1.7e-52 209.9 170 61.8
Lj7C386G15 Lonicera japonica HOM05D007043 ORTHO05D004353 4.9e-52 208.4 157 66.9
Zm00001eb282940 Zea mays HOM05D007043 ORTHO05D008951 2.7e-50 202.6 155 61.9
TPR.G17053 Trifolium pratense HOM05D007043 ORTHO05D008951 4.3e-48 195.3 188 54.3
Pp3c20_5410 Physcomitrium patens HOM05D007043 ORTHO05D008951 1.8e-46 189.9 137 64.2
Cre08.g358900 Chlamydomonas reinhardtii HOM05D007043 ORTHO05D008951 1.1e-40 170.6 187 50.8
CBR_g38956 Chara braunii HOM05D007043 ORTHO05D008951 2.5e-40 169.5 190 48.4
Cre17.g708100 Chlamydomonas reinhardtii HOM05D007043 ORTHO05D008951 5.2e-38 161.8 182 48.4
Actinidia17764 Actinidia chinensis HOM05D007043 ORTHO05D008951 6.8e-38 161.4 132 64.4
PRCOL_00003632 Prasinoderma coloniale HOM05D007043 ORTHO05D008951 2.8e-31 139.4 182 43.4
MCO13G296 Micromonas commoda HOM05D007043 ORTHO05D008951 1.4e-30 137.1 187 42.8
SGA_v2.0_scaffold364G49968 Striga asiatica HOM05D007043 ORTHO05D008951 3.8e-28 129.0 187 42.2
TPR.G793 Trifolium pratense HOM05D007043 ORTHO05D008951 6.4e-28 128.3 78 74.4
Sabra05G0151000 Salix brachista HOM05D000032 ORTHO05D004353 4.7e-23 112.1 56 92.9
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 1.2e-10 70.9 84 58.3


User provided reference genes

Program Settings