Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 2308.9 1172 100.0
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 2186.8 1227 91.2
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 2123.6 1173 92.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 2058.5 1230 86.2
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1989.9 1172 86.4
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1981.5 1171 85.9
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1973.4 1168 86.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1972.6 1168 86.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1971.8 1171 85.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1942.9 1171 84.5
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1941.8 1172 84.6
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1938.7 1170 84.8
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1931.4 1179 83.9
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1924.4 1172 84.0
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1920.6 1171 83.8
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1917.9 1172 84.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1916.4 1172 84.0
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1914.8 1179 84.0
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1914.8 1171 83.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1910.2 1172 83.8
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1908.6 1167 83.0
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1907.1 1171 82.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1892.1 1213 81.3
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1891.7 1217 81.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1891.7 1217 81.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1886.3 1172 82.5
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1885.9 1217 81.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1881.3 1171 81.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1877.4 1171 81.8
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1877.4 1171 81.6
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1876.7 1168 82.4
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1867.4 1172 82.3
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1865.9 1178 81.4
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1864.4 1199 80.5
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1860.5 1202 80.4
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1858.2 1172 80.5
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1855.5 1176 81.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1848.2 1171 80.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1846.2 1173 80.9
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1177 80.9
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1840.1 1207 78.7
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1836.2 1207 78.6
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1836.2 1173 80.4
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1835.1 1172 80.7
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1833.9 1174 82.2
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1832.0 1172 80.4
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1825.8 1172 80.2
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1810.8 1211 78.4
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1808.5 1208 78.2
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1807.3 1169 79.4
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1805.4 1172 79.2
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1804.6 1173 79.3
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1803.9 1172 79.1
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1802.7 1171 79.3
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1176 79.0
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1796.9 1171 78.7
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1795.4 1174 79.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1793.9 1172 78.7
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1789.2 1173 79.6
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1786.5 1204 77.0
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1784.6 1230 75.8
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1229 75.5
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1169 77.7
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1780.4 1173 77.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1778.1 1172 78.9
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1777.7 1099 82.6
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1776.5 1172 77.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1168 78.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1773.4 1171 78.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1771.9 1171 77.9
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1771.5 1173 77.8
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1158 78.5
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1170 77.5
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1763.4 1173 77.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1228 74.9
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1174 77.6
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1761.5 1173 77.3
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1759.2 1173 77.5
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1758.0 1173 77.5
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1752.6 1176 77.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1750.3 1173 76.7
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1742.6 1202 75.9
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1741.5 1175 76.6
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1739.9 1210 75.3
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1739.5 1175 76.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1738.0 1176 76.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1738.0 1171 76.4
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1174 76.8
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1176 76.3
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1731.1 1181 76.4
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1730.3 1176 75.8
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1726.5 1175 76.3
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1726.1 1172 76.8
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1725.7 1182 76.1
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1724.9 1176 75.7
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1723.8 1177 76.3
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1718.7 1178 76.5
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1718.4 1150 77.1
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1718.4 1192 75.2
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1713.4 1176 76.2
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1708.3 1072 81.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1172 76.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1703.7 1179 75.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1173 74.8
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1699.5 1170 75.7
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1698.3 1179 75.6
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1186 75.0
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1678.3 1176 75.5
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1173 75.4
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1641.3 1182 72.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1187 73.2
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1629.8 1174 72.2
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1625.9 1208 71.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1625.5 1147 73.8
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1622.1 1176 72.4
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1110 76.0
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1576.6 1172 70.6
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1566.2 946 83.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1564.7 1171 69.7
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1544.3 946 83.2
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1486.9 1034 76.9
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1486.9 1175 68.0
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1475.7 1176 67.9
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1395.2 975 75.4
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1394.8 948 77.1
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1303.1 978 72.5
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1302.7 959 72.6
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1288.9 888 75.2
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1272.3 1173 60.4
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1257.7 969 70.9
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1212.6 814 78.0
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1200.3 805 77.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1191.0 812 76.7
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1180.2 807 76.7
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1084.3 723 78.1
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 4.0e-311 1071.6 1168 55.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 3.6e-294 1015.4 1173 49.4
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.9e-288 995.7 539 91.5
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.1e-286 989.6 1207 47.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 7.0e-274 948.0 603 81.6
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.5e-260 903.7 715 68.7
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.9e-194 684.1 431 80.0
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.2e-172 611.7 359 84.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-148 531.2 899 42.2
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.7e-148 530.8 306 84.3
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.2e-137 495.4 308 78.9
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 6.2e-137 493.0 308 78.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-131 475.3 627 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 5.8e-127 459.9 805 37.4
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.3e-122 443.7 285 81.8
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 3.6e-113 414.1 1321 29.5
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.9e-102 377.9 228 79.8
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.3e-91 342.4 510 44.9
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.7e-86 325.5 198 81.3
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.5e-85 321.6 205 78.0
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.6e-84 317.8 182 84.6
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-82 312.8 283 63.6
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.6e-76 290.8 187 75.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 2.7e-68 265.0 257 60.3
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 4.7e-68 264.2 144 88.9
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.7e-65 254.6 181 72.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 4.5e-63 247.7 186 69.9
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 9.4e-53 213.4 152 69.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.3e-51 208.8 130 82.3
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.4e-48 199.5 118 87.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.8e-46 191.4 125 76.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-37 162.5 92 91.3
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 3.5e-31 141.7 86 81.4
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 4.6e-31 141.4 91 75.8
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 4.6e-31 141.4 91 75.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 6.0e-23 114.4 78 74.4
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.6e-21 107.8 83 69.9
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.9e-17 95.5 81 55.6
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.1e-16 93.6 59 76.3
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 5.4e-16 91.3 46 82.6
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 5.4e-16 91.3 91 54.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 2.7e-15 89.0 139 43.2


User provided reference genes

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