Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.5e-77 293.1 189 100.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.2e-69 266.9 189 88.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.1e-64 250.4 189 84.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 5.6e-64 248.1 191 89.0
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.0e-61 239.6 190 87.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 4.4e-61 238.4 189 85.7
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.1e-54 217.2 190 65.3
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.0e-53 213.0 189 74.1
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.4e-53 212.2 192 65.1
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.4e-53 211.8 191 66.5
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.3e-52 210.3 191 78.0
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.2e-52 209.5 195 71.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 6.4e-52 208.0 189 75.1
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 6.4e-52 208.0 189 81.0
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 8.3e-52 207.6 191 64.4
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.1e-51 207.2 192 73.4
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.1e-51 207.2 189 74.6
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.4e-51 206.1 189 68.8
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 7.1e-51 204.5 190 62.6
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 7.1e-51 204.5 193 75.6
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.6e-50 203.4 191 79.6
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.6e-50 203.4 193 71.0
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.1e-50 203.0 189 77.2
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.6e-50 201.8 190 66.3
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 6.0e-50 201.4 193 78.2
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.0e-49 200.7 193 71.5
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.7e-49 199.9 199 65.8
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.7e-49 199.9 194 79.4
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.0e-49 199.1 193 71.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.1e-48 197.2 194 62.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.5e-48 196.8 192 62.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.5e-48 196.8 200 59.0
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.9e-48 196.4 192 70.3
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.5e-48 196.1 192 61.5
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.5e-48 196.1 191 72.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.3e-48 195.3 191 70.7
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.3e-48 195.3 191 68.6
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.6e-48 194.9 189 72.5
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 5.6e-48 194.9 190 60.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 7.3e-48 194.5 191 70.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 9.5e-48 194.1 191 69.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.2e-47 193.7 190 61.6
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.6e-47 193.4 190 68.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.6e-47 193.4 153 69.9
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.1e-47 193.0 189 72.0
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 2.8e-47 192.6 191 62.8
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 4.7e-47 191.8 193 63.7
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 6.2e-47 191.4 198 73.7
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 8.1e-47 191.0 191 65.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.4e-46 190.3 194 71.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.4e-46 190.3 195 75.9
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.8e-46 189.9 193 77.2
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.8e-46 189.9 193 78.2
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.8e-46 189.9 193 63.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.8e-46 189.9 189 69.8
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 4.0e-46 188.7 153 72.5
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.2e-45 187.2 190 66.8
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.2e-45 187.2 195 71.3
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.5e-45 186.8 191 66.0
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.5e-45 186.8 192 71.9
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-45 186.8 191 67.0
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.6e-45 186.0 191 68.6
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.6e-45 186.0 190 66.3
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 3.4e-45 185.7 199 65.3
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.4e-45 185.3 193 67.9
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 5.8e-45 184.9 192 71.9
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 9.9e-45 184.1 193 66.3
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.9e-45 184.1 154 65.6
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.3e-44 183.7 190 66.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.7e-44 183.3 189 65.6
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.7e-44 183.3 189 67.2
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.7e-44 183.3 192 60.4
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.7e-44 183.3 151 76.8
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.7e-44 183.3 154 65.6
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.7e-44 183.3 192 64.6
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.9e-44 182.6 191 73.8
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.9e-44 182.6 190 72.6
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 3.8e-44 182.2 190 67.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.8e-44 182.2 193 73.6
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.8e-44 182.2 191 66.0
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 8.4e-44 181.0 191 66.0
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 8.4e-44 181.0 190 70.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 8.4e-44 181.0 189 65.1
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.1e-43 180.6 197 68.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.4e-43 180.3 190 71.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.4e-43 179.5 189 69.3
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.4e-43 179.5 189 69.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 3.2e-43 179.1 191 62.3
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 7.1e-43 177.9 191 61.8
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 7.1e-43 177.9 190 72.6
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 9.2e-43 177.6 153 74.5
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.6e-42 176.8 189 64.0
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.1e-42 176.4 191 66.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.5e-42 175.6 190 66.8
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 6.0e-42 174.9 191 64.4
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 7.8e-42 174.5 138 80.4
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 7.8e-42 174.5 192 59.9
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.0e-41 174.1 184 69.0
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.0e-41 174.1 153 71.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.3e-41 173.7 189 67.2
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.7e-41 173.3 191 58.1
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 3.9e-41 172.2 191 68.1
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 3.9e-41 172.2 189 68.8
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 5.1e-41 171.8 189 60.8
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 6.6e-41 171.4 193 67.9
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.1e-40 170.6 191 61.3
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.5e-40 170.2 190 66.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.9e-40 169.9 188 73.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.6e-40 168.3 190 70.0
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 9.6e-40 167.5 194 60.3
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 9.6e-40 167.5 192 62.5
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 9.6e-40 167.5 224 61.2
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 6.2e-39 164.9 192 62.0
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.4e-38 163.7 175 58.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.4e-38 162.9 160 70.6
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 9.9e-37 157.5 85 91.8
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 3.8e-36 155.6 196 54.6
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 6.4e-36 154.8 159 60.4
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 8.4e-36 154.5 177 67.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 8.4e-36 154.5 140 64.3
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 8.4e-36 154.5 171 73.1
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 4.2e-35 152.1 203 51.7
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.2e-35 152.1 95 82.1
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.4e-35 151.8 165 53.9
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.5e-29 132.1 75 86.7
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 7.6e-29 131.3 70 88.6
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 4.9e-28 128.6 69 87.0
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.7e-26 122.9 116 73.3
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 3.0e-25 119.4 150 60.7
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 3.9e-25 119.0 153 63.4
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.3e-24 115.9 112 60.7
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 2.0e-21 106.7 82 63.4
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 3.4e-21 105.9 65 80.0
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 3.4e-21 105.9 188 47.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 7.6e-21 104.8 70 78.6
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 8.4e-20 101.3 173 61.3
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.9e-19 100.1 173 56.1
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 4.2e-19 99.0 149 60.4
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 7.9e-18 94.7 139 43.2
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 6.7e-17 91.7 82 54.9
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.1e-16 90.9 80 53.8
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.4e-14 83.2 152 61.8
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.0e-09 67.8 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 4.8e-07 58.9 39 61.5
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.4e-06 57.4 106 53.8


User provided reference genes

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