Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 7.9e-273 943.3 540 100.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 3.0e-195 685.6 543 74.2
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.6e-138 496.5 549 56.8
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 5.0e-57 226.5 563 37.3
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 6.7e-54 216.1 547 35.8
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 4.5e-50 203.4 588 37.1
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 7.7e-50 202.6 545 35.0
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 8.5e-49 199.1 586 36.0
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.4e-48 198.4 240 49.2
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 5.5e-48 196.4 240 48.3
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 6.1e-47 193.0 547 31.8
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.0e-46 192.2 587 37.3
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 5.7e-45 186.4 146 65.8
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 9.7e-45 185.7 229 50.2
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.7e-44 184.9 551 32.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 3.7e-44 183.7 269 43.1
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.7e-44 183.7 231 50.6
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 4.8e-44 183.3 541 32.5
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 8.2e-44 182.6 558 32.8
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.1e-43 182.2 253 46.6
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.4e-43 181.0 236 48.7
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.2e-42 178.7 409 36.9
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 3.5e-42 177.2 149 61.1
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.5e-42 176.8 232 45.7
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 7.7e-42 176.0 259 45.9
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.0e-41 175.6 237 45.1
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.0e-41 175.6 246 45.5
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 2.9e-41 174.1 239 46.9
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.9e-41 174.1 222 46.8
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.5e-41 172.6 237 44.7
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.1e-40 172.2 195 47.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 3.2e-40 170.6 193 48.2
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 4.2e-40 170.2 233 46.4
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.2e-39 168.7 227 45.8
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 2.1e-39 167.9 237 44.7
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.6e-39 167.2 264 40.9
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 3.6e-39 167.2 149 56.4
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 4.7e-39 166.8 149 53.7
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 6.1e-39 166.4 264 42.0
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.4e-38 165.2 145 56.6
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.4e-38 165.2 239 42.7
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.8e-38 164.9 276 38.4
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.8e-38 164.9 193 47.7
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 2.3e-38 164.5 148 55.4
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.0e-38 164.1 144 58.3
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.0e-38 164.1 276 38.4
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.7e-38 162.9 186 52.2
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 8.8e-38 162.5 148 54.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.1e-37 162.2 148 54.1
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.1e-37 162.2 154 52.6
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.1e-37 162.2 149 53.7
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.0e-37 161.4 181 49.7
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.6e-37 161.0 190 47.4
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 2.6e-37 161.0 141 57.4
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 5.7e-37 159.8 147 55.8
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 7.4e-37 159.5 384 33.6
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 7.4e-37 159.5 194 47.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.7e-36 158.3 184 47.8
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.7e-36 158.3 265 41.9
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 2.2e-36 157.9 184 47.8
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 2.8e-36 157.5 147 57.1
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 2.8e-36 157.5 149 53.7
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 6.3e-36 156.4 506 31.2
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 6.3e-36 156.4 250 40.8
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.1e-35 155.6 224 44.6
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.1e-35 155.6 251 39.8
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.4e-35 155.2 490 30.6
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 3.1e-35 154.1 293 36.2
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.1e-35 154.1 283 38.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 4.1e-35 153.7 250 40.8
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 5.3e-35 153.3 145 54.5
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 5.3e-35 153.3 146 55.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.2e-34 152.1 568 33.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.2e-34 152.1 255 38.4
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.6e-34 151.0 146 54.8
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 5.9e-34 149.8 243 37.9
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.0e-33 149.1 204 44.1
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.3e-33 148.7 493 30.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.3e-33 148.7 146 52.7
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.7e-33 148.3 221 43.4
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.9e-33 147.5 230 42.6
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.0e-33 146.7 229 44.1
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.1e-32 145.6 134 55.2
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.1e-32 145.6 142 52.8
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.1e-32 145.6 536 29.7
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.5e-32 145.2 248 41.9
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 4.2e-32 143.7 142 52.1
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.7e-31 141.0 137 53.3
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.1e-31 139.8 278 37.1
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 6.1e-31 139.8 170 45.3
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.0e-30 139.0 255 38.0
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.0e-30 139.0 135 53.3
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.0e-30 139.0 184 45.7
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 3.0e-30 137.5 148 51.4
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 4.0e-30 137.1 226 42.0
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.2e-29 135.6 189 42.3
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.0e-29 134.8 233 39.9
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.6e-29 134.4 553 27.1
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 2.2e-28 131.3 227 41.4
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 4.1e-27 127.1 198 39.4
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 4.1e-27 127.1 185 43.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 7.0e-27 126.3 158 43.0
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 2.0e-26 124.8 209 38.3
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 2.7e-26 124.4 226 33.6
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 3.5e-26 124.0 182 42.9
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 3.8e-25 120.6 225 35.1
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.5e-25 119.8 202 38.6
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 7.2e-24 116.3 245 35.5
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.1e-23 114.8 273 31.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.8e-22 111.7 177 35.0
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 2.3e-22 111.3 147 44.2
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 4.0e-22 110.5 118 49.2
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 6.8e-22 109.8 237 38.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.5e-21 108.6 146 43.8
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.3e-20 105.5 107 50.5
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.2e-20 104.8 99 50.5
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 6.3e-20 103.2 165 38.2
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.4e-19 101.3 132 37.9
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.7e-18 97.8 219 33.3
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 6.6e-17 93.2 223 29.6
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.9e-16 91.7 115 46.1
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.9e-16 91.7 401 29.7
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.3e-16 90.9 228 28.9
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.2e-16 90.5 212 34.4
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 5.5e-16 90.1 94 50.0
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.3e-14 84.7 202 34.2
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.4e-13 80.9 238 31.1
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 2.8e-12 77.8 67 56.7
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 4.9e-12 77.0 147 36.7
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 9.5e-08 62.8 108 38.0
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.6e-07 62.0 168 30.4
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 2.1e-07 61.6 114 36.0
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 2.8e-07 61.2 141 31.9
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 3.6e-07 60.8 64 48.4
Pp3c8_6770 Physcomitrium patens HOM05D000136 ORTHO05D000080 3.1e-06 57.8 81 39.5


User provided reference genes

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