Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.1e-113 413.3 200 100.0
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 5.7e-83 311.2 208 74.5
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 9.7e-67 257.3 211 67.8
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.2e-66 256.1 210 66.2
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-65 253.8 212 63.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.8e-63 245.4 209 63.2
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.7e-60 234.6 204 63.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.7e-60 234.6 204 63.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.5e-59 233.4 178 65.2
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 9.7e-59 230.7 205 60.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.2e-58 229.6 217 56.7
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.2e-58 227.6 203 61.1
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.4e-57 226.9 206 58.7
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.8e-57 226.5 207 59.4
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.3e-57 224.9 211 59.7
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 9.1e-57 224.2 217 59.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.7e-56 222.6 213 60.1
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 3.5e-56 222.2 221 59.3
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 4.5e-56 221.9 181 63.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.2e-55 219.5 215 60.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.2e-55 219.5 230 51.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 8.5e-55 217.6 224 56.7
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.1e-54 217.2 216 57.9
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.5e-54 216.9 209 58.4
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.5e-54 216.9 214 56.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.9e-54 216.5 206 57.8
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.2e-54 215.7 205 57.6
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 7.2e-54 214.5 227 53.3
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.7e-53 212.6 206 57.8
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.0e-52 210.7 205 56.6
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.0e-52 210.7 205 57.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.3e-52 209.5 214 53.7
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.8e-52 208.0 206 56.8
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.0e-51 206.5 207 56.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 3.4e-51 205.7 227 53.3
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 4.4e-51 205.3 200 55.5
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-50 203.8 207 55.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-50 203.8 207 55.6
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.7e-50 203.4 216 54.6
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.7e-50 202.2 202 55.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 3.7e-50 202.2 202 55.0
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-49 200.3 218 54.1
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.8e-49 199.9 202 54.5
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.4e-49 199.5 209 51.7
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.6e-48 196.8 212 51.9
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.6e-48 196.8 206 52.4
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.9e-48 194.9 211 53.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 5.9e-48 194.9 214 51.4
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-47 193.7 217 52.5
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.1e-46 190.7 207 53.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.3e-46 189.1 212 50.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.8e-45 186.0 208 47.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.0e-44 184.1 203 51.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.8e-44 183.3 188 52.1
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.8e-44 181.4 209 50.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.0e-43 179.9 212 52.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.6e-43 179.5 220 49.5
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.6e-43 179.5 163 56.4
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.7e-42 176.8 210 49.0
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.2e-42 176.4 212 50.5
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.8e-42 176.0 207 51.2
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.9e-42 175.3 211 47.9
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 4.9e-42 175.3 211 49.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 6.3e-42 174.9 204 45.6
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 8.3e-42 174.5 224 47.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.1e-41 174.1 204 45.6
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.1e-41 174.1 208 47.6
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 5.4e-41 171.8 208 49.0
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 5.4e-41 171.8 208 49.0
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 9.2e-41 171.0 204 51.0
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.2e-40 170.6 225 46.2
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 4.5e-40 168.7 201 47.3
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 4.5e-40 168.7 226 46.5
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.3e-39 167.2 217 50.7
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-39 166.4 215 47.0
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.3e-39 166.4 211 46.9
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.9e-39 166.0 215 46.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.9e-39 166.0 215 46.5
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.0e-39 165.2 211 46.4
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 5.0e-39 165.2 214 45.8
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 5.0e-39 165.2 214 45.8
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 5.0e-39 165.2 214 45.8
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 8.6e-39 164.5 211 46.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 8.6e-39 164.5 211 46.4
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 8.6e-39 164.5 211 46.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.6e-39 164.5 205 48.8
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.5e-38 163.7 214 45.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.5e-38 162.9 211 46.0
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.5e-38 162.9 151 58.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.5e-38 162.9 178 50.0
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.3e-38 162.5 211 46.0
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.3e-38 162.5 211 46.0
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.3e-38 162.5 207 47.8
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 3.3e-38 162.5 222 45.9
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 7.3e-38 161.4 211 43.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-37 160.6 194 47.9
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.1e-37 159.8 198 47.5
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.1e-37 159.8 212 45.8
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.6e-37 159.1 211 45.5
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.7e-37 158.7 214 45.8
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 8.0e-37 157.9 212 45.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.4e-36 157.1 179 50.3
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-36 157.1 180 50.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-36 156.8 215 45.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.8e-36 156.8 215 45.1
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.8e-36 156.8 206 44.7
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-36 156.4 215 45.1
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-36 156.4 215 45.1
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.3e-36 156.4 215 45.1
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.0e-36 156.0 215 46.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 3.0e-36 156.0 99 72.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 5.2e-36 155.2 251 40.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.2e-36 155.2 210 47.6
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 6.8e-36 154.8 218 47.2
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.5e-35 153.7 214 44.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 4.4e-35 152.1 213 44.1
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.5e-35 151.4 233 43.8
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 3.7e-34 149.1 212 43.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.8e-33 146.7 195 44.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-33 146.4 195 47.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 7.0e-33 144.8 235 40.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 9.2e-33 144.4 223 41.7
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 9.2e-33 144.4 222 41.4
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.6e-32 143.7 193 42.5
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.7e-32 142.9 170 47.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 7.8e-32 141.4 194 45.4
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.0e-31 141.0 170 47.6
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.7e-31 140.2 252 38.5
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 5.0e-31 138.7 209 44.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 5.0e-31 138.7 259 38.6
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 6.6e-31 138.3 205 43.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.1e-30 137.5 201 39.8
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 5.2e-28 128.6 125 57.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.2e-27 127.5 172 42.4
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-27 127.1 175 42.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-27 127.1 168 44.6
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.3e-26 124.0 193 42.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.7e-26 123.6 178 44.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.1e-25 120.9 204 37.7
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.4e-25 119.8 174 43.7
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 4.6e-24 115.5 197 40.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 6.0e-24 115.2 154 50.6
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.0e-23 112.1 175 42.3
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.0e-23 112.1 187 39.0
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.9e-22 110.2 199 37.7
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 4.3e-22 109.0 225 36.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-21 105.5 127 49.6
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.2e-21 105.1 213 34.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-20 104.0 212 34.9
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.5e-19 100.5 207 37.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.4e-17 94.0 178 35.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 9.2e-17 91.3 207 31.9
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.6e-16 90.5 211 32.7
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.6e-16 90.5 199 33.7
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.1e-16 90.1 164 37.2
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 4.6e-16 89.0 249 28.5
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-15 86.7 190 34.7
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-15 86.7 190 34.7
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.0e-15 86.3 190 34.2
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 6.6e-15 85.1 187 34.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 6.6e-15 85.1 187 34.2
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.9e-14 83.6 107 43.0
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 3.3e-14 82.8 204 31.9
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.3e-14 81.6 91 47.3
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 7.3e-14 81.6 173 32.4
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 8.1e-13 78.2 182 34.1
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 8.1e-13 78.2 126 40.5
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-11 73.9 94 42.6
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-10 70.9 170 30.0
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.6e-08 62.4 175 30.9
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 4.6e-08 62.4 87 40.2
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 1.7e-07 60.5 89 38.2
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.1e-07 58.9 105 35.2


User provided reference genes

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