Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.8e-258 894.0 567 100.0
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 9.7e-213 743.8 578 80.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 9.8e-165 584.3 578 69.6
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.6e-157 559.7 595 66.4
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.9e-128 463.8 522 60.2
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.5e-112 411.0 532 51.7
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.2e-108 397.1 537 49.2
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 6.7e-105 385.6 551 52.3
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.3e-104 382.9 537 48.2
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 9.7e-104 381.7 533 49.7
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.8e-103 380.2 535 51.6
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.5e-101 374.4 533 52.0
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.7e-98 363.6 534 52.2
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 3.6e-98 363.2 574 45.5
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.6e-98 363.2 529 50.1
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 8.8e-97 358.6 536 48.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.3e-95 354.8 515 54.0
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.2e-95 354.0 529 50.5
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.3e-95 352.4 506 49.8
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.8e-94 350.9 504 46.6
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 3.1e-94 350.1 524 53.1
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.1e-94 350.1 515 51.1
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.1e-94 350.1 544 54.4
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 5.3e-94 349.4 533 50.1
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.2e-93 348.2 535 46.2
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.6e-93 347.1 533 50.1
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.6e-93 347.1 507 49.7
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 3.5e-93 346.7 533 46.9
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-92 345.1 513 52.0
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.5e-91 341.3 535 49.5
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.2e-91 340.1 527 50.5
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 3.2e-91 340.1 574 46.7
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.1e-88 331.6 531 53.9
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-88 330.9 529 49.0
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 2.6e-88 330.5 515 47.0
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.4e-88 329.7 526 53.6
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 9.7e-88 328.6 553 47.7
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.8e-87 327.0 516 46.1
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.8e-86 324.3 523 54.3
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.6e-85 321.2 534 45.7
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.0e-85 320.9 529 43.9
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 5.9e-85 319.3 539 49.7
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 8.5e-84 315.5 535 50.3
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 9.4e-83 312.0 625 44.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.1e-82 310.8 522 44.8
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 6.1e-82 309.3 505 46.3
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 4.0e-81 306.6 528 42.8
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 4.0e-81 306.6 532 49.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-80 304.7 516 45.7
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.4e-80 303.1 516 45.5
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 2.8e-79 300.4 537 44.5
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 4.8e-79 299.7 497 49.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.1e-78 298.5 534 41.0
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.4e-78 298.1 495 43.8
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 5.4e-78 296.2 460 49.6
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 2.0e-77 294.3 542 41.1
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 2.7e-77 293.9 531 40.7
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 9.4e-75 285.4 508 41.1
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 8.8e-73 278.9 517 43.5
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.2e-72 278.5 514 47.9
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.4e-72 276.6 346 55.8
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.3e-71 275.0 507 46.9
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.3e-71 275.0 506 40.3
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 8.3e-71 272.3 504 46.4
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.1e-70 271.9 538 43.5
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.8e-70 271.2 465 43.9
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 7.0e-70 269.2 508 40.4
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 9.2e-70 268.9 475 41.9
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.0e-69 267.7 526 38.8
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.7e-69 267.3 516 46.5
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 4.5e-69 266.5 505 39.8
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 4.5e-69 266.5 488 42.4
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.9e-67 261.2 510 40.4
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.6e-67 259.6 510 40.6
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 3.6e-66 256.9 531 39.4
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.0e-65 255.4 273 58.6
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.2e-64 251.9 513 43.3
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 2.0e-64 251.1 506 38.1
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 7.5e-64 249.2 515 40.4
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.7e-63 248.1 382 60.7
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.2e-63 247.7 478 42.9
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 4.9e-63 246.5 498 41.6
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 8.3e-63 245.7 495 44.2
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.8e-62 244.6 514 42.6
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.4e-62 244.2 501 41.5
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.2e-61 241.9 552 40.8
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.7e-61 240.7 534 36.9
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.7e-61 240.7 491 43.6
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.8e-61 239.2 503 41.9
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.9e-60 236.9 489 42.9
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 5.0e-60 236.5 326 50.3
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.9e-59 234.6 507 39.4
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 7.3e-59 232.6 499 38.7
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.6e-58 231.5 517 35.8
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 2.8e-58 230.7 490 39.4
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.7e-58 229.9 541 38.1
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.0e-57 228.8 522 36.6
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.7e-55 221.5 518 35.3
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.7e-55 220.3 506 36.8
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.4e-55 219.5 489 39.3
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.4e-55 219.5 375 44.5
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 3.2e-54 217.2 526 35.0
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.0e-53 214.5 519 38.0
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 7.8e-53 212.6 490 36.9
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.5e-51 207.6 521 39.9
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 3.3e-51 207.2 539 34.9
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 4.7e-50 203.4 465 37.8
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.1e-49 202.2 502 35.9
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-48 197.2 500 35.6
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.2e-46 190.7 509 38.1
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.3e-36 158.7 251 41.8
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.0e-36 157.5 433 38.6
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 8.1e-34 149.4 123 65.9
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.6e-29 135.2 351 34.2
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 7.8e-29 132.9 268 39.6
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.9e-27 128.3 98 68.4
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.9e-27 128.3 513 31.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.5e-27 127.9 119 61.3
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.3e-26 125.6 519 33.7
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.6e-24 117.9 163 44.2
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 9.9e-24 115.9 347 33.7
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.7e-21 107.8 283 36.7
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 9.6e-19 99.4 555 25.0
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.6e-18 98.6 113 46.0
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 8.1e-18 96.3 291 33.7
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.8e-17 95.1 103 53.4
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.4e-17 94.7 264 40.2
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 5.3e-17 93.6 74 68.9
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 3.4e-16 90.9 58 75.9
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.3e-14 82.8 305 29.5
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 7.9e-13 79.7 129 44.2
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.6e-11 73.6 54 66.7
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.4e-09 68.2 73 52.1
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.1e-09 67.8 57 56.1
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 2.6e-08 64.7 63 52.4
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 1.1e-06 59.3 373 36.2
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.1e-06 59.3 288 27.4
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 1.9e-06 58.5 113 34.5


User provided reference genes

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