Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 2.1e-174 615.5 303 100.0
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 3.8e-147 525.0 443 64.6
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 2.4e-101 372.9 423 47.8
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 3.7e-86 322.4 426 43.2
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 1.8e-85 320.1 423 43.5
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 1.9e-82 310.1 427 44.0
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 3.3e-82 309.3 437 41.9
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 7.3e-82 308.1 411 45.5
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.4e-80 303.9 437 43.0
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 6.4e-78 295.0 365 47.7
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 1.1e-77 294.3 432 40.7
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.4e-77 293.9 434 40.3
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 3.2e-77 292.7 425 39.1
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 5.4e-77 292.0 430 41.6
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 5.4e-77 292.0 423 41.4
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 7.8e-76 288.1 424 39.9
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 3.0e-75 286.2 430 41.2
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 7.3e-74 281.6 431 40.4
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 1.6e-73 280.4 431 39.2
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 1.6e-73 280.4 430 40.5
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 2.8e-73 279.6 417 41.0
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 3.6e-73 279.3 425 39.8
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 8.1e-73 278.1 429 39.2
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 4.0e-72 275.8 424 38.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.3e-70 270.8 422 39.8
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 4.9e-70 268.9 430 38.8
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 1.1e-69 267.7 429 36.6
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 1.4e-69 267.3 422 38.4
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 3.2e-69 266.2 459 37.7
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 4.1e-69 265.8 426 38.5
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 7.1e-69 265.0 428 36.9
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 1.2e-68 264.2 428 36.9
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 2.1e-68 263.5 422 37.0
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 2.7e-68 263.1 419 37.7
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 9.5e-66 254.6 419 36.8
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 4.7e-65 252.3 406 40.6
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 6.2e-65 251.9 420 36.0
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 5.2e-64 248.8 415 36.9
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.5e-63 247.3 380 39.5
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 9.9e-63 244.6 419 35.8
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 2.9e-62 243.0 351 44.4
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.1e-61 241.1 421 36.6
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 1.4e-61 240.7 427 36.1
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 1.3e-59 234.2 419 34.4
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 3.9e-59 232.6 423 35.5
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 2.5e-58 229.9 414 34.8
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 6.2e-57 225.3 442 34.8
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 2.0e-55 220.3 388 35.8
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 2.0e-55 220.3 412 34.7
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 3.4e-55 219.5 497 30.8
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 3.4e-55 219.5 393 35.4
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 7.6e-55 218.4 421 33.0
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 1.3e-54 217.6 154 66.9
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 2.2e-54 216.9 425 32.7
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 7.8e-52 208.4 423 33.6
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 3.0e-51 206.5 161 59.0
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 3.9e-51 206.1 369 35.5
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 1.8e-48 197.2 368 34.2
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 2.9e-46 189.9 361 36.6
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 3.8e-46 189.5 389 33.4
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.8e-43 180.6 372 32.5
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 3.0e-43 179.9 387 31.8
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 8.7e-43 178.3 163 52.1
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 3.3e-42 176.4 349 34.1
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.8e-41 173.3 153 55.6
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 3.2e-37 159.8 163 52.8
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 3.2e-37 159.8 385 33.0
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 1.2e-36 157.9 341 30.8
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 8.2e-33 145.2 451 27.1
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.1e-32 144.8 246 37.8
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 9.0e-32 141.7 85 74.1
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.2e-31 141.4 146 50.0
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 4.6e-28 129.4 141 46.8
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 2.3e-27 127.1 157 43.9
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 3.0e-27 126.7 149 42.3
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 5.7e-26 122.5 71 73.2
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 5.9e-23 112.5 168 40.5
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.3e-22 111.3 143 42.0
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 6.5e-22 109.0 85 62.4
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 9.4e-21 105.1 133 42.9
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 1.0e-14 85.1 134 35.1
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 2.0e-10 70.9 51 62.7
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 2.8e-09 67.0 36 77.8
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 1.8e-08 64.3 158 32.3


User provided reference genes

Program Settings