Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 4.9e-185 651.0 325 100.0
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.7e-167 592.0 325 91.7
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 6.7e-158 560.8 340 83.8
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.8e-142 509.6 323 78.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.8e-134 483.0 325 75.7
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.1e-133 480.3 323 74.6
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.8e-132 474.9 308 77.6
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 7.0e-131 471.1 310 77.1
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.7e-130 467.6 326 74.2
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.3e-129 466.8 325 72.9
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.2e-129 466.1 310 76.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 6.5e-129 464.5 329 71.7
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 6.5e-129 464.5 318 74.2
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.5e-128 462.6 320 72.8
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 9.4e-128 460.7 313 74.1
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 3.6e-127 458.8 326 72.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 6.7e-126 454.5 328 69.2
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.0e-125 453.0 314 72.6
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 5.7e-125 451.4 324 71.6
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.7e-125 451.4 309 75.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 7.5e-125 451.1 331 71.0
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 9.7e-125 450.7 318 72.3
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 9.7e-125 450.7 306 76.1
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 9.7e-125 450.7 326 71.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.3e-124 450.3 320 71.9
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.3e-124 450.3 323 69.3
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.8e-123 446.4 324 68.2
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.4e-123 446.0 313 71.2
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.1e-123 445.7 323 69.0
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.1e-123 445.3 306 74.8
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.2e-122 443.7 311 72.0
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 5.9e-122 441.4 324 68.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.8e-121 438.7 323 70.6
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 3.8e-121 438.7 317 69.1
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.1e-120 437.2 300 72.7
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.1e-120 437.2 323 67.8
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.5e-120 436.8 320 70.6
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 3.2e-120 435.6 321 70.4
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 4.2e-120 435.3 322 68.6
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.5e-120 434.9 325 69.2
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 9.4e-120 434.1 350 66.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.6e-119 433.3 325 68.3
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.1e-119 433.0 310 71.0
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 3.6e-119 432.2 327 67.3
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.7e-119 431.8 275 78.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.1e-119 431.4 322 67.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 6.1e-119 431.4 325 69.2
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 8.0e-119 431.0 322 67.1
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.8e-118 429.9 323 66.6
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.3e-118 429.5 324 66.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.3e-118 429.5 304 71.1
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.2e-118 428.3 322 66.8
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.8e-118 427.9 310 70.3
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 8.8e-118 427.6 311 68.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 8.8e-118 427.6 322 68.3
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.2e-117 427.2 306 70.6
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.2e-117 427.2 324 68.5
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.5e-117 426.8 321 67.6
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 5.7e-117 424.9 324 67.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 7.5e-117 424.5 327 67.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.2e-116 422.9 340 65.9
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.8e-116 422.5 324 66.7
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 2.8e-116 422.5 323 65.9
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 8.3e-116 421.0 328 65.2
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.3e-116 421.0 321 69.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.1e-115 420.6 324 66.7
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-115 420.6 306 69.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.1e-115 419.1 348 64.4
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 3.1e-115 419.1 321 64.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 7.0e-115 417.9 346 65.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.7e-114 416.0 315 67.3
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 5.9e-114 414.8 321 63.9
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-113 414.1 306 68.0
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.7e-113 413.3 316 65.5
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.7e-113 413.3 274 75.2
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.5e-112 410.2 393 58.8
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.5e-112 408.3 334 64.4
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 5.5e-112 408.3 324 63.6
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.2e-111 407.1 322 64.0
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-110 403.3 368 58.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 5.2e-110 401.7 310 64.2
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 8.8e-110 401.0 307 66.1
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.0e-109 399.8 310 65.2
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.6e-109 399.4 309 64.4
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 3.4e-109 399.1 328 65.9
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 4.4e-109 398.7 275 72.0
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 7.5e-109 397.9 308 66.2
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 7.5e-109 397.9 307 67.4
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.2e-108 396.4 346 60.4
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.8e-108 396.0 310 65.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 8.3e-108 394.4 267 72.3
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.1e-107 394.0 277 71.8
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.4e-107 392.9 314 67.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 3.1e-107 392.5 307 64.5
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 5.4e-107 391.7 307 64.2
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 5.9e-106 388.3 267 70.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.3e-105 386.3 307 63.5
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.9e-105 386.0 306 63.7
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 6.6e-105 384.8 291 67.0
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 6.6e-105 384.8 335 59.7
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 8.6e-105 384.4 292 67.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 2.5e-104 382.9 313 62.9
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.3e-104 381.3 310 63.2
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 7.3e-104 381.3 276 69.2
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.6e-103 380.2 306 62.7
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.0e-102 375.9 310 62.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.2e-98 364.0 304 61.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.6e-98 362.1 305 63.0
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 7.8e-98 361.3 302 60.3
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.3e-97 360.5 253 72.7
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.9e-96 356.7 325 60.6
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.5e-96 356.3 302 56.3
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 5.6e-96 355.1 247 70.0
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 7.3e-96 354.8 308 59.1
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 8.0e-95 351.3 313 59.1
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.4e-94 350.5 308 58.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.4e-94 350.5 304 58.2
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.2e-94 348.6 317 59.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 4.4e-93 345.5 240 69.2
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.8e-93 345.1 318 59.4
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 6.4e-92 341.7 315 61.3
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.7e-89 333.6 307 55.4
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 5.0e-89 332.0 231 73.6
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-88 330.5 313 57.5
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.8e-86 323.6 461 45.1
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 8.9e-86 321.2 232 69.0
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.4e-77 292.7 318 52.5
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.6e-71 273.9 198 68.7
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 7.6e-69 265.0 311 48.6
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 6.4e-68 261.9 172 77.9
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.2e-66 257.7 186 70.4
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-64 250.8 211 63.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.5e-61 239.2 185 64.9
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.9e-60 236.5 299 46.2
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.4e-60 235.0 164 70.1
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 8.4e-60 235.0 216 58.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 7.9e-58 228.4 171 68.4
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.0e-57 228.0 193 58.5
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 3.9e-57 226.1 221 54.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 6.7e-57 225.3 170 66.5
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.5e-56 223.4 271 48.7
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 3.3e-56 223.0 147 73.5
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 9.6e-56 221.5 265 47.9
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.1e-55 220.3 178 65.7
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.2e-52 210.3 291 41.6
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.1e-51 205.3 232 51.7
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 8.7e-49 198.4 132 75.0
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.9e-48 197.2 198 55.6
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.5e-48 196.8 144 69.4
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.3e-48 196.4 151 65.6
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-47 194.1 218 48.6
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.8e-46 190.7 331 40.5
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.1e-46 189.9 139 67.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.8e-39 166.8 149 57.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-38 164.9 121 66.9
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.5e-37 159.5 115 68.7
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 7.2e-35 152.1 170 43.5
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.3e-33 147.9 106 71.7
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-32 144.1 176 47.2
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-27 127.9 136 52.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.1e-25 119.4 122 53.3
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 6.7e-25 119.0 113 55.8
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-22 111.3 84 70.2
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.4e-22 111.3 116 54.3
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-21 108.2 84 66.7
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.4e-19 98.6 65 72.3
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 8.2e-15 85.5 88 53.4
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 3.1e-14 83.6 66 68.2
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 3.5e-13 80.1 66 68.2
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-11 75.1 90 46.7
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.2e-11 73.2 44 79.5
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 6.1e-10 69.3 97 42.3
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-06 58.5 56 55.4
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 1.8e-06 57.8 36 75.0


User provided reference genes

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