Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.0e-160 567.8 300 100.0
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 5.9e-108 394.8 277 75.5
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.1e-89 333.2 265 71.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.1e-50 204.5 357 40.6
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.6e-49 199.5 260 46.9
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.2e-47 194.5 278 45.7
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.7e-46 189.5 309 43.0
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 6.4e-46 188.7 292 44.9
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 6.4e-46 188.7 308 43.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.0e-45 185.3 248 46.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.5e-44 183.0 308 40.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.9e-42 177.2 310 41.9
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 5.6e-42 175.6 246 45.5
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.6e-41 174.1 272 43.4
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 8.1e-41 171.8 255 43.1
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 5.2e-40 169.1 260 47.7
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.4e-39 166.4 293 41.3
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 4.4e-39 166.0 276 43.8
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.7e-38 164.1 273 41.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.2e-38 163.7 255 43.9
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.3e-38 161.8 273 42.5
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.4e-37 160.2 254 43.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 4.1e-37 159.5 155 58.7
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.1e-37 158.7 263 43.3
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.1e-36 157.1 307 40.4
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.7e-36 156.8 283 41.0
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 7.8e-36 155.2 263 42.2
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 7.8e-36 155.2 138 60.1
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.0e-35 154.8 129 62.0
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.0e-35 154.8 254 40.2
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-35 154.8 263 41.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.3e-35 154.5 147 57.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.3e-35 153.7 155 54.2
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.3e-35 153.7 266 41.7
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.0e-35 153.3 287 39.0
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 3.9e-35 152.9 267 40.8
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.1e-35 152.5 288 41.3
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 6.6e-35 152.1 207 46.9
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 6.6e-35 152.1 268 39.9
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 6.6e-35 152.1 207 46.9
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.6e-35 152.1 275 43.3
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-34 150.6 263 41.4
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 4.3e-34 149.4 113 63.7
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 7.3e-34 148.7 184 50.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 9.5e-34 148.3 112 63.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-33 147.9 316 36.1
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 4.7e-33 146.0 271 38.0
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 6.2e-33 145.6 170 48.8
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 8.1e-33 145.2 327 38.8
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.4e-32 144.4 290 38.6
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.8e-32 144.1 254 39.4
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 4.0e-32 142.9 157 52.9
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-31 141.4 133 57.9
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.3e-30 137.9 303 35.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.3e-30 137.9 268 39.6
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.1e-29 134.8 156 48.7
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.4e-29 134.4 113 57.5
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.4e-29 134.4 312 35.3
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.9e-29 134.0 226 41.2
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.7e-28 130.2 233 37.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-27 127.9 124 58.9
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.3e-27 127.1 149 45.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.3e-27 127.1 107 58.9
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 3.0e-27 126.7 244 39.8
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.0e-27 126.7 124 58.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.6e-27 125.6 124 58.9
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-26 124.0 311 37.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.5e-26 123.6 196 42.3
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.5e-26 123.6 132 47.0
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.5e-26 123.6 215 41.4
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 3.3e-26 123.2 244 36.9
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-25 120.2 134 51.5
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.8e-25 120.2 120 51.7
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.8e-25 120.2 118 56.8
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.8e-25 120.2 177 46.3
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.2e-25 119.0 118 57.6
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 6.2e-25 119.0 250 38.0
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 8.1e-25 118.6 133 51.1
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 8.1e-25 118.6 257 35.0
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.8e-24 117.5 244 35.2
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.1e-24 116.7 118 55.9
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 5.2e-24 115.9 166 43.4
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 8.9e-24 115.2 65 80.0
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.5e-23 114.4 165 41.2
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.5e-23 114.4 281 32.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 5.8e-23 112.5 81 61.7
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.8e-23 112.5 237 38.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.7e-22 110.9 123 50.4
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.9e-22 109.4 124 52.4
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.9e-22 109.4 249 34.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 4.9e-22 109.4 189 40.2
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.1e-21 108.2 139 47.5
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-21 107.8 176 43.8
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.4e-21 107.1 206 39.3
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.2e-21 106.7 72 68.1
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.2e-21 106.7 72 68.1
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.2e-21 106.3 115 48.7
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 9.3e-21 105.1 186 39.2
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-20 104.8 115 47.8
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.6e-20 104.4 87 58.6
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.6e-20 104.4 87 58.6
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.7e-20 103.6 115 51.3
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 7.8e-20 102.1 119 48.7
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.6e-19 99.0 263 34.2
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 6.6e-19 99.0 198 34.3
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.5e-18 97.8 190 40.5
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.9e-18 97.4 78 57.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.5e-18 97.1 151 44.4
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.5e-18 97.1 135 44.4
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.5e-18 97.1 77 57.1
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.3e-18 96.7 87 55.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.3e-18 96.3 135 43.7
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 5.6e-18 95.9 75 57.3
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 7.3e-18 95.5 156 38.5
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.6e-18 95.1 135 43.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 9.6e-18 95.1 107 49.5
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 9.6e-18 95.1 256 31.2
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.3e-17 94.7 112 47.3
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.6e-17 94.4 135 43.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-17 94.0 135 43.0
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.8e-17 93.6 119 46.2
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 6.2e-17 92.4 169 37.9
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.2e-17 92.4 119 42.0
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.4e-16 91.3 126 46.8
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.8e-16 90.9 65 61.5
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.8e-16 90.9 189 38.1
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.1e-16 90.1 70 57.1
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.6e-15 87.0 115 40.9
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.3e-14 84.7 117 43.6
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.2e-14 84.0 121 44.6
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 6.4e-14 82.4 88 48.9
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 8.4e-14 82.0 190 38.9
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.6e-12 77.8 121 43.0
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 4.6e-12 76.3 71 52.1
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.6e-12 76.3 227 32.2
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 6.0e-12 75.9 63 61.9
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 7.9e-12 75.5 115 43.5
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 7.9e-12 75.5 115 43.5
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 7.9e-12 75.5 111 40.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-11 74.7 189 36.0
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.3e-11 73.9 128 38.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 3.9e-11 73.2 175 33.7
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 3.3e-10 70.1 100 43.0
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 4.3e-10 69.7 208 27.9
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.6e-10 68.6 106 40.6
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 9.6e-10 68.6 119 37.0
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.3e-09 68.2 167 35.3
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.3e-09 68.2 144 35.4
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.8e-08 64.3 43 62.8
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.1e-08 63.5 205 29.3
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 6.9e-08 62.4 42 69.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.2e-07 61.6 119 32.8
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 1.2e-07 61.6 192 31.8
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.5e-07 61.2 208 31.2
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.0e-07 60.8 147 32.0
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 2.0e-07 60.8 107 42.1
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 3.8e-06 56.6 198 36.4
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 3.8e-06 56.6 129 32.6
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 6.4e-06 55.8 88 39.8
Nitab4.5_0000425g0070 Nicotiana tabacum HOM05D004520 ORTHO05D005520 8.4e-06 55.5 36 66.7
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 8.4e-06 55.5 72 37.5
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 8.4e-06 55.5 72 37.5
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 8.4e-06 55.5 72 37.5


User provided reference genes

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