Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.9e-164 582.0 342 100.0
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 3.2e-142 508.8 346 88.4
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.9e-135 485.7 344 82.0
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 8.4e-119 431.0 349 76.8
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.6e-104 382.9 345 65.8
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.9e-102 376.7 360 65.8
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 3.2e-102 375.9 351 67.5
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.3e-100 370.5 353 62.6
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 5.1e-100 368.6 350 72.9
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.7e-98 362.5 352 61.4
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.7e-98 362.5 347 61.4
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.4e-97 359.8 350 61.4
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 4.1e-97 359.0 351 65.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.5e-96 357.1 364 66.2
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 2.9e-95 352.8 351 65.0
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.9e-94 350.1 349 62.2
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.2e-93 347.4 348 67.0
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.6e-93 347.1 343 58.3
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.1e-93 346.7 345 62.9
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.6e-93 345.5 352 64.2
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.0e-92 344.4 364 58.0
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 9.7e-91 337.8 351 61.5
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 9.7e-91 337.8 342 68.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.4e-89 334.0 365 60.0
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.8e-89 333.6 365 62.2
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.1e-89 332.8 361 57.3
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.2e-88 330.9 369 60.2
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.2e-88 330.9 362 55.0
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.5e-88 330.5 358 64.5
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.6e-88 329.7 359 52.9
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 3.4e-88 329.3 362 54.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-87 327.4 361 57.9
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 3.8e-87 325.9 372 61.6
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.5e-87 324.7 351 60.4
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.1e-86 324.3 351 60.7
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.4e-86 323.9 344 67.2
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 3.2e-86 322.8 343 58.3
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 4.2e-86 322.4 383 57.7
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 5.5e-86 322.0 363 56.2
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.6e-85 320.5 363 54.5
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 2.1e-85 320.1 352 58.5
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 4.7e-85 318.9 365 56.2
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 3.0e-84 316.2 371 57.7
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 8.8e-84 314.7 362 59.4
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-83 313.9 351 53.8
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.5e-83 313.9 361 56.5
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.8e-82 308.9 363 55.1
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.4e-81 306.6 369 53.1
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.1e-81 306.2 342 59.6
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 5.3e-81 305.4 354 59.0
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.7e-79 300.4 358 57.3
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.2e-79 300.1 366 52.7
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 8.5e-79 298.1 337 49.9
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.9e-78 297.0 268 63.4
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 9.4e-78 294.7 347 55.3
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 9.4e-78 294.7 358 53.4
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 3.9e-76 289.3 364 56.3
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.0e-75 287.0 373 53.9
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.0e-75 287.0 371 51.2
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.4e-73 280.8 372 53.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 3.1e-73 279.6 278 61.2
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 7.0e-73 278.5 355 53.8
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.9e-72 275.4 352 57.1
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.3e-71 274.2 352 50.0
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.9e-71 273.1 357 50.7
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.9e-70 270.4 371 52.8
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-69 267.3 355 51.3
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 3.6e-69 266.2 352 51.4
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 4.7e-69 265.8 349 55.0
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 8.0e-69 265.0 358 53.6
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.0e-68 264.6 366 50.5
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.0e-68 263.1 347 56.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.2e-67 261.2 346 55.5
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.3e-67 259.6 348 54.3
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 4.4e-67 259.2 348 51.1
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 9.7e-67 258.1 349 48.7
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-66 257.3 352 48.0
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-66 257.3 352 48.0
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-66 257.3 352 48.0
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 3.7e-66 256.1 343 52.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.1e-65 254.6 353 47.6
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.1e-65 254.6 349 52.1
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.2e-64 251.1 359 55.2
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.7e-64 250.0 335 47.5
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.7e-64 250.0 299 52.2
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.7e-63 247.3 341 46.6
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 2.2e-63 246.9 360 53.6
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.1e-62 244.6 342 51.2
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 2.5e-62 243.4 348 48.0
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 5.5e-62 242.3 346 48.0
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.2e-61 241.1 357 52.7
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.6e-61 240.7 337 51.6
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.1e-61 240.4 350 50.3
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.7e-61 240.0 366 47.3
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.0e-61 238.4 272 52.2
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 6.8e-60 235.3 290 58.3
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 8.8e-60 235.0 347 49.0
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 8.8e-60 235.0 351 43.9
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.2e-59 234.6 347 49.6
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-58 230.3 343 44.9
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.2e-58 230.3 343 50.7
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 8.3e-58 228.4 354 46.9
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 2.4e-57 226.9 352 46.9
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 2.4e-57 226.9 263 52.9
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 9.1e-57 224.9 346 49.1
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.2e-56 224.6 350 52.0
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.5e-56 223.0 360 46.4
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 5.9e-56 222.2 364 49.5
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 7.7e-56 221.9 347 50.4
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-55 220.7 352 43.2
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.8e-55 219.5 332 54.8
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 8.6e-55 218.4 352 41.2
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.1e-53 213.8 342 50.3
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 3.6e-53 213.0 376 46.3
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 3.6e-53 213.0 292 47.6
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.0e-52 211.5 345 47.0
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.4e-52 211.1 352 53.7
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.3e-52 210.3 341 47.8
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 4.0e-52 209.5 373 47.7
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 8.9e-52 208.4 337 42.7
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 8.9e-52 208.4 337 42.7
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 8.9e-52 208.4 349 43.8
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-51 208.0 336 41.7
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-51 207.6 335 41.5
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 3.4e-51 206.5 373 50.4
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 3.4e-51 206.5 373 50.4
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 3.4e-51 206.5 336 41.7
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 3.4e-51 206.5 373 50.4
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.4e-51 206.1 340 45.0
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.7e-50 203.0 234 50.4
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 8.3e-50 201.8 347 41.5
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 4.1e-49 199.5 201 53.7
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-48 197.2 340 41.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 2.0e-48 197.2 340 42.9
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-48 196.4 339 46.6
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-48 196.4 339 46.6
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-48 196.4 339 46.6
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 3.5e-48 196.4 338 47.9
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 3.5e-48 196.4 238 59.2
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.9e-47 193.4 347 39.5
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.9e-47 193.4 372 47.0
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-46 191.0 342 43.0
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.9e-46 190.7 258 45.7
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 8.0e-45 185.3 350 39.7
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.2e-42 177.2 342 38.6
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.3e-39 167.9 336 36.9
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.9e-38 164.1 405 34.1
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.5e-38 163.7 362 35.6
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 5.6e-38 162.5 333 47.4
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 9.5e-38 161.8 334 37.7
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.2e-37 161.4 341 36.7
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.1e-37 160.6 264 39.4
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 2.1e-37 160.6 354 35.9
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 6.2e-37 159.1 425 33.4
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.1e-36 158.3 345 35.7
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 6.8e-36 155.6 346 35.5
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 2.0e-35 154.1 340 35.6
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.7e-34 151.0 320 40.0
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 9.2e-33 145.2 336 34.8
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.5e-30 137.1 336 33.6
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.5e-30 137.1 261 40.6
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.1e-28 130.2 334 35.0
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 9.9e-27 125.2 199 53.8
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 3.2e-25 120.2 345 38.0
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 2.1e-24 117.5 341 32.6
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 8.6e-23 112.1 356 42.7
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.8e-20 104.4 172 43.6
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 6.0e-16 89.4 115 49.6
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.0e-15 87.0 163 37.4
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 3.6e-13 80.1 190 31.6
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.5e-11 74.7 95 47.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 8.4e-10 68.9 306 25.8
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-08 63.5 41 68.3
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 6.0e-08 62.8 320 25.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.3e-07 61.6 312 23.4
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.3e-07 60.8 287 25.8
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.3e-07 60.8 215 24.7
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 6.6e-07 59.3 307 24.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 6.6e-07 59.3 319 25.7
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.1e-06 58.5 313 23.6
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.9e-06 57.8 299 25.8
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.9e-06 57.8 318 24.5
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.9e-06 57.8 297 26.3
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 2.5e-06 57.4 119 34.5
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 4.3e-06 56.6 291 27.1
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 7.3e-06 55.8 315 24.1
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.6e-06 55.5 327 25.7


User provided reference genes

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