Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.2e-224 781.9 394 100.0
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 7.0e-210 733.8 392 93.1
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 7.0e-194 680.6 397 85.4
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.0e-189 665.2 396 83.6
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 4.0e-181 638.3 396 79.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.5e-175 619.8 376 78.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.2e-172 610.1 363 79.3
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.4e-172 608.2 372 80.4
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 9.8e-172 607.1 376 79.3
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.7e-171 606.3 390 75.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.4e-170 603.2 363 79.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 5.4e-170 601.3 362 79.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.5e-169 598.6 383 76.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.0e-168 597.0 372 78.2
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.7e-168 596.3 369 78.3
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.9e-168 595.1 372 78.0
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.5e-167 593.2 372 78.0
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 3.3e-167 592.0 393 73.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.3e-167 591.7 345 82.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.8e-166 589.0 376 76.6
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-165 587.0 403 72.0
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.1e-165 587.0 376 76.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-165 587.0 361 77.3
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.2e-164 583.6 364 76.6
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.3e-163 580.1 372 75.8
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.3e-163 580.1 375 76.3
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.7e-163 579.7 403 71.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.2e-162 575.5 373 75.3
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-161 573.2 346 79.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.6e-161 573.2 372 72.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 2.1e-161 572.8 393 71.8
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.1e-161 572.8 407 70.3
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.0e-161 571.2 345 80.0
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.0e-160 570.5 376 71.8
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.3e-160 570.1 346 77.7
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.7e-160 569.7 371 74.9
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.9e-160 568.5 366 74.0
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 5.1e-160 568.2 358 72.9
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 6.6e-160 567.8 370 75.9
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 8.6e-160 567.4 343 79.3
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 8.6e-160 567.4 362 74.0
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.9e-159 566.2 371 75.2
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 2.5e-159 565.8 375 74.1
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.5e-159 565.8 359 76.6
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.3e-159 565.1 371 74.1
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 7.3e-159 564.3 363 75.2
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.2e-158 563.5 374 74.9
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 3.6e-158 562.0 373 74.5
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.7e-158 561.6 379 73.9
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-157 560.5 376 73.1
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-157 560.5 376 73.1
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-157 560.1 373 74.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.4e-157 560.1 391 70.6
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.8e-157 559.7 373 74.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.8e-157 559.7 373 74.0
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.1e-157 558.9 362 76.8
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.1e-157 558.9 377 72.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.0e-157 558.5 375 72.5
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.0e-157 558.5 375 72.5
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 4.0e-157 558.5 392 71.9
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 5.2e-157 558.1 373 73.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 6.9e-157 557.8 373 74.0
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.9e-157 557.8 339 77.3
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.5e-156 556.6 364 73.6
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 9.9e-156 553.9 360 71.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.3e-155 553.5 351 75.8
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 6.4e-155 551.2 379 69.4
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.4e-154 550.1 393 69.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.7e-153 545.8 380 69.5
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.0e-153 544.7 351 74.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 6.0e-153 544.7 365 71.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 6.0e-153 544.7 364 72.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.1e-151 540.4 365 71.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.5e-151 540.0 385 67.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-149 533.9 340 74.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.8e-149 533.1 379 67.5
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.4e-149 532.7 379 67.5
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 4.0e-149 531.9 364 70.1
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-148 530.4 375 70.7
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.4e-148 528.9 396 64.6
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.4e-148 528.9 345 73.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.5e-148 528.5 372 68.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 9.9e-148 527.3 379 67.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.3e-147 526.9 364 69.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.7e-147 526.6 342 74.3
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.9e-147 525.8 375 66.7
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.9e-147 525.8 345 73.9
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.9e-147 525.0 361 69.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.4e-147 524.6 363 69.7
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.1e-146 523.9 394 64.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.1e-146 523.9 394 67.0
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.4e-146 522.7 362 69.6
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 5.4e-146 521.5 361 69.0
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 7.1e-146 521.2 371 68.7
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.2e-145 520.4 352 70.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 7.9e-145 517.7 384 67.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 5.1e-144 515.0 401 66.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.1e-144 515.0 353 70.5
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.1e-143 513.8 334 73.4
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.9e-143 513.1 338 72.2
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.6e-143 511.5 367 67.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 2.1e-142 509.6 372 67.2
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 6.2e-142 508.1 321 72.9
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.1e-141 505.8 362 67.7
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 9.0e-141 504.2 377 65.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.4e-138 496.9 394 62.9
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.2e-137 493.8 363 65.3
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.1e-137 493.0 306 74.5
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.1e-137 493.0 345 69.0
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.0e-136 490.7 309 74.1
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.3e-135 485.7 385 64.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.6e-134 483.4 353 66.9
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.6e-134 483.4 372 64.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 3.7e-134 482.3 345 67.8
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-133 480.7 341 69.8
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 5.7e-127 458.4 381 59.6
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 5.3e-125 451.8 372 60.8
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.2e-123 446.4 391 58.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.2e-122 442.6 330 67.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 5.5e-122 441.8 342 61.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.6e-121 439.1 360 61.4
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.9e-120 435.6 284 74.6
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.9e-119 433.3 357 57.7
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 6.9e-117 424.9 298 64.8
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.0e-115 418.7 231 83.1
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.7e-113 412.9 376 57.7
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 7.9e-113 411.4 361 58.7
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.7e-110 403.7 328 57.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.1e-109 397.9 304 66.1
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 6.5e-107 391.7 346 55.5
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.0e-104 384.4 316 61.7
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.9e-98 363.6 203 83.3
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-96 356.3 198 83.8
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 3.5e-92 342.8 198 79.3
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.0e-91 341.3 236 72.5
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 7.5e-87 325.1 219 72.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 7.7e-84 315.1 177 84.2
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.1e-81 307.0 231 64.9
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 8.0e-81 305.1 276 54.3
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.6e-73 280.8 399 37.6
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-72 277.7 229 61.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 3.4e-71 273.1 304 43.8
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 4.9e-70 269.2 344 40.7
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.4e-70 268.9 207 60.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.9e-67 259.6 221 59.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 9.5e-58 228.4 367 35.1
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 6.8e-56 222.2 199 56.8
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 9.2e-53 211.8 335 37.9
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 7.8e-44 182.2 125 72.0
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.0e-32 143.3 116 62.9
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.8e-31 139.4 148 52.0
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 9.9e-31 138.7 138 52.9
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-23 114.4 66 77.3
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 7.9e-20 102.4 57 80.7


User provided reference genes

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