Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G154512 Populus trichocarpa HOM05D000445 ORTHO05D000314 2.9e-51 204.9 101 100.0
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 2.9e-51 204.9 101 100.0
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.5e-49 198.0 101 96.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 4.6e-49 197.6 101 96.0
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 6.0e-49 197.2 101 96.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 6.0e-49 197.2 101 96.0
FAN16G0873 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.3e-48 196.1 103 96.1
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.3e-48 196.1 103 96.1
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.3e-48 196.1 103 96.1
Gohir.A09G102032 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.8e-48 195.7 101 94.1
Gohir.D11G067240 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.8e-48 195.7 101 95.0
Sc25g0002080 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.8e-48 195.7 101 95.0
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.3e-48 195.3 101 94.1
arahy.Tifrunner.gnm1.ann1.5R36BF Arachis hypogaea HOM05D000445 ORTHO05D000314 3.3e-47 191.4 101 94.1
arahy.Tifrunner.gnm1.ann1.GB87JX Arachis hypogaea HOM05D000445 ORTHO05D000314 3.3e-47 191.4 101 94.1
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 3.3e-47 191.4 101 94.1
Peaxi162Scf00336g00013 Petunia axillaris HOM05D000445 ORTHO05D000314 3.3e-47 191.4 101 91.1
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-46 189.1 101 90.1
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-46 189.1 101 90.1
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-46 189.1 101 90.1
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-46 189.1 101 90.1
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-46 189.1 101 90.1
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-46 189.1 101 90.1
HanXRQChr00c0349g0573981 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr00c0368g0574211 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr00c0392g0574471 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr00c0572g0575961 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr11g0327041 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 90.1
Nitab4.5_0000349g0190 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.1e-46 186.8 101 89.1
Gohir.D01G115001 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.8e-45 185.7 100 91.0
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 2.4e-45 185.3 101 90.1
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 3.1e-45 184.9 102 91.2
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 3.1e-45 184.9 102 91.2
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-45 183.3 101 88.1
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-44 183.0 101 89.1
LjContig00319g0003005 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-44 183.0 101 89.1
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-44 183.0 101 89.1
Gohir.D05G318250 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.5e-44 182.6 95 93.7
Nn021s41513 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.6e-44 181.8 101 88.1
Nn145s44090 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.6e-44 181.8 101 88.1
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 2.6e-44 181.8 101 88.1
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 2.6e-44 181.8 101 88.1
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 3.4e-44 181.4 101 88.1
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 3.4e-44 181.4 101 88.1
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 3.4e-44 181.4 101 88.1
Solyc10g012230.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.8e-44 180.6 101 87.1
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
BNapus_Darmor_BZH_scaffold_287p00300 Brassica napus HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
BolC2t10583H Brassica oleracea HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
BolSC49t61158H Brassica oleracea HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 88.1
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 7.6e-44 180.3 101 87.1
Gohir.D11G213450 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.0e-43 179.9 98 91.8
Glyma.20G045200 Glycine max HOM05D000445 ORTHO05D000314 2.2e-43 178.7 101 88.1
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 8.4e-43 176.8 101 86.1
AL4G23530 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.1e-42 176.4 101 86.1
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 1.9e-42 175.6 97 89.7
Gohir.D09G052912 Gossypium hirsutum HOM05D000445 ORTHO05D000314 7.1e-42 173.7 96 87.5
Nitab4.5_0004864g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.3e-40 168.7 101 83.2
Nitab4.5_0023562g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.3e-40 168.7 101 82.2
BraSC59t46564Z Brassica rapa HOM05D000445 ORTHO05D000314 6.7e-40 167.2 102 83.3
Lalb_Chr23g0274311 Lupinus albus HOM05D000445 ORTHO05D000314 8.7e-40 166.8 101 84.2
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 7.4e-39 163.7 80 97.5
Lalb_Chr13g0292961 Lupinus albus HOM05D000445 ORTHO05D000314 5.3e-37 157.5 84 90.5
BolSC45t60890H Brassica oleracea HOM05D000445 ORTHO05D000314 3.8e-35 151.4 101 77.2
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 1.6e-33 146.0 101 74.3
HanXRQChr00c0634g0576611 Helianthus annuus HOM05D000445 ORTHO05D000314 6.1e-33 144.1 81 86.4
HanXRQChr00c0925g0577911 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-31 139.8 101 72.3
Medtr8g071910 Medicago truncatula HOM05D000445 ORTHO05D000314 3.3e-31 138.3 101 71.3
HanXRQChr14g0437931 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-30 135.2 74 89.2
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-29 132.9 101 69.3
HanXRQChr10g0284451 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-29 132.9 101 69.3
BraSC103t45490Z Brassica rapa HOM05D000445 ORTHO05D000314 1.5e-28 129.4 101 67.3
BraSC58t46446Z Brassica rapa HOM05D000445 ORTHO05D000314 1.5e-28 129.4 101 67.3
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.5e-28 129.4 100 69.0
Migut.M00566 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.6e-28 128.6 78 79.5
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund29890 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Hund29991 Selenicereus undatus HOM05D000445 ORTHO05D000314 7.2e-26 120.6 101 68.3
Lsat_1_v5_gn_9_86681 Lactuca sativa HOM05D000445 ORTHO05D000314 3.0e-24 115.2 60 86.7
BolSC35t60677H Brassica oleracea HOM05D000445 ORTHO05D000314 8.8e-24 113.6 101 61.4
BolSC35t60723H Brassica oleracea HOM05D000445 ORTHO05D000314 8.8e-24 113.6 101 61.4
BolSC47t61074H Brassica oleracea HOM05D000445 ORTHO05D000314 8.8e-24 113.6 101 61.4
BraSC138t45547Z Brassica rapa HOM05D000445 ORTHO05D000314 8.8e-24 113.6 101 61.4
HanXRQChr00c0903g0577861 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-23 113.2 80 71.2
HanXRQChr00c0585g0576261 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-23 112.8 101 61.4
HanXRQChr05g0152511 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-23 112.8 101 61.4
RcHm_v2.0_Chr2g0118471 Rosa chinensis HOM05D000445 ORTHO05D000314 4.3e-23 111.3 63 92.1
HanXRQChr00c0448g0574781 Helianthus annuus HOM05D000445 ORTHO05D000314 3.7e-22 108.2 53 94.3
arahy.Tifrunner.gnm1.ann1.VSF4TK Arachis hypogaea HOM05D000445 ORTHO05D000314 1.1e-21 106.7 65 84.6
HanXRQChr00c0126g0571801 Helianthus annuus HOM05D000445 ORTHO05D000314 4.1e-21 104.8 53 90.6
HanXRQChr10g0317991 Helianthus annuus HOM05D000445 ORTHO05D000314 4.1e-21 104.8 53 90.6
HanXRQChr11g0326551 Helianthus annuus HOM05D000445 ORTHO05D000314 4.1e-21 104.8 53 90.6
Hund27860 Selenicereus undatus HOM05D000445 ORTHO05D000314 9.1e-21 103.6 82 64.6
EL10Ac1g00387 Beta vulgaris HOM05D000580 ORTHO05D001362 1.0e-19 100.1 57 86.0
Lalb_Chr07g0191941 Lupinus albus HOM05D000445 ORTHO05D000314 5.0e-19 97.8 53 94.3
Solyc06g048990.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-19 97.4 70 68.6
BraSC58t46471Z Brassica rapa HOM05D000445 ORTHO05D000314 1.9e-18 95.9 66 78.8
BolSC29t60489H Brassica oleracea HOM05D000445 ORTHO05D000314 1.2e-17 93.2 51 82.4
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 3.9e-16 88.2 70 67.1
Solyc12g036000.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.1e-16 87.8 59 72.9
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 7.4e-15 84.0 46 84.8
Solyc04g024560.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.4e-13 79.0 101 45.5
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.0e-11 71.2 43 81.4
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 8.5e-11 70.5 64 65.6
Sed0003894 Sechium edule HOM05D000445 ORTHO05D000314 3.2e-10 68.6 53 69.8
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 9.4e-10 67.0 35 94.3
Nitab4.5_0001761g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.4e-10 67.0 57 64.9
Nitab4.5_0003961g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-08 63.2 57 59.6
Nitab4.5_0022403g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.8e-08 62.8 76 51.3


User provided reference genes

Program Settings