Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.0e-199 699.1 418 100.0
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.0e-138 496.5 410 76.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.6e-119 432.2 379 67.8
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 6.1e-95 352.1 359 61.0
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.2e-92 343.6 427 54.1
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.2e-92 343.6 428 54.2
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.3e-86 323.6 427 51.1
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 6.7e-86 322.0 389 55.5
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.7e-86 322.0 422 53.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.2e-82 311.2 427 51.3
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.9e-82 308.9 413 52.1
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.9e-82 308.9 413 52.1
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.5e-80 303.5 380 51.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.5e-80 303.5 384 50.8
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.2e-78 295.8 388 48.5
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.6e-77 293.5 435 45.5
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.1e-75 286.2 433 44.8
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.3e-73 281.2 435 48.0
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.3e-73 281.2 385 49.9
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 5.0e-73 279.3 413 45.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.5e-73 278.9 374 49.5
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-72 277.7 373 49.1
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.1e-71 273.9 405 45.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.0e-70 269.6 386 46.4
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 7.5e-69 265.4 401 46.1
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.1e-67 260.0 432 45.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 7.0e-67 258.8 388 44.3
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.1e-64 251.5 399 45.1
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.9e-64 250.8 384 44.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.7e-63 246.1 336 56.2
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.1e-63 245.7 431 42.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.4e-62 244.6 372 45.2
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.8e-62 244.2 452 42.0
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.0e-62 243.4 386 44.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.2e-61 241.5 379 44.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-61 240.4 486 41.8
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 5.7e-61 239.2 478 42.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.7e-61 239.2 390 42.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.2e-60 237.3 336 47.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 4.8e-60 236.1 310 52.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.1e-59 233.4 391 43.0
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.0e-58 230.7 431 43.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 4.5e-58 229.6 325 51.1
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.9e-57 226.9 321 51.7
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.5e-56 222.6 403 41.2
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 9.5e-56 221.9 427 42.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 9.5e-56 221.9 427 42.2
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.2e-55 221.5 453 39.3
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.6e-55 219.9 417 42.7
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 4.7e-55 219.5 457 43.1
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.4e-54 218.0 466 37.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.8e-54 217.6 394 44.2
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.8e-54 217.6 451 38.4
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 6.8e-54 215.7 495 35.8
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.2e-53 214.9 387 41.1
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.0e-53 214.2 496 35.7
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.4e-53 213.4 513 37.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.4e-53 213.4 449 37.4
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.4e-53 213.4 424 42.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 4.4e-53 213.0 369 41.5
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 7.5e-53 212.2 322 50.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.7e-52 211.1 525 33.3
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.4e-51 208.0 485 36.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 5.4e-51 206.1 466 37.3
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.2e-51 205.3 275 48.7
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-50 204.1 256 51.6
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-50 204.1 256 51.6
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.0e-50 204.1 280 47.5
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 3.5e-50 203.4 417 39.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 5.9e-50 202.6 275 49.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.9e-49 200.3 456 37.7
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.9e-49 200.3 323 48.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 8.6e-49 198.7 513 37.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.1e-48 198.4 450 37.1
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.5e-48 198.0 426 38.3
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.3e-48 196.8 455 36.7
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.3e-48 196.4 445 39.8
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 9.5e-48 195.3 434 36.6
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.2e-47 194.9 310 45.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.6e-47 193.4 420 38.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.0e-46 189.9 570 33.5
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.2e-46 189.5 365 42.5
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.6e-45 187.2 382 43.2
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 3.4e-45 186.8 513 34.1
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 9.8e-45 185.3 297 42.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.8e-45 185.3 515 33.8
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-44 184.9 429 35.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.7e-44 184.5 430 36.0
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.9e-44 183.7 375 40.3
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 3.7e-44 183.3 338 41.4
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.7e-44 183.3 425 36.9
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.4e-43 181.4 278 44.6
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.8e-43 181.0 319 45.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 3.2e-43 180.3 418 39.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.1e-43 179.9 376 40.7
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.1e-43 179.9 341 39.0
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 4.1e-43 179.9 401 36.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 7.0e-43 179.1 439 38.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.0e-43 179.1 445 42.5
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 7.0e-43 179.1 319 44.8
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 2.7e-42 177.2 234 48.7
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.7e-42 177.2 320 45.3
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.0e-41 175.3 301 44.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.1e-40 171.8 197 51.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.1e-39 167.5 231 53.2
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.1e-39 167.5 483 32.9
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 3.6e-39 166.8 274 43.1
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 2.6e-37 160.6 257 45.1
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.7e-36 157.9 190 52.6
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.7e-36 157.9 193 50.8
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.9e-36 156.4 422 36.3
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.4e-35 152.9 486 34.2
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.6e-34 149.8 187 51.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.1e-32 145.2 421 32.3
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.5e-32 144.8 229 45.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.9e-32 144.4 258 43.4
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 7.3e-32 142.5 420 33.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.6e-31 141.4 235 45.5
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.8e-31 140.6 425 33.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 4.7e-31 139.8 478 31.2
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 4.7e-31 139.8 186 56.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-30 138.3 511 30.1
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.4e-30 138.3 345 36.5
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.3e-30 137.5 406 32.0
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.3e-30 137.5 185 49.2
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 5.2e-30 136.3 243 41.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.5e-29 134.8 148 52.7
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.6e-29 134.0 441 30.8
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 9.9e-29 132.1 288 38.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.7e-28 131.3 492 29.3
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.7e-28 131.3 421 33.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.2e-28 131.0 265 40.0
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 7.1e-27 125.9 318 34.6
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 9.2e-27 125.6 461 33.2
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.2e-26 125.2 190 44.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.2e-26 125.2 392 31.1
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.0e-25 122.1 357 31.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 5.1e-25 119.8 309 36.6
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 9.5e-24 115.5 400 32.0
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.4e-22 111.7 379 34.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.1e-22 110.5 245 38.4
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.1e-22 110.5 217 39.2
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.5e-21 108.2 240 38.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.8e-21 106.3 379 31.4
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 3.8e-20 103.6 138 49.3
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 6.4e-20 102.8 388 29.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.4e-19 101.7 221 39.4
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.4e-19 101.7 295 32.5
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.6e-18 98.2 134 59.0
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.8e-18 95.9 184 38.6
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 7.8e-18 95.9 180 40.0
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.7e-17 92.4 391 29.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.9e-16 91.3 229 36.7
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.9e-16 91.3 326 30.1
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.1e-14 85.5 382 30.4
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.8e-14 84.7 184 37.0
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.8e-14 84.7 407 29.2
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 9.0e-14 82.4 182 37.9
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.4e-13 80.1 279 30.1
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 4.9e-12 76.6 143 42.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.9e-11 74.7 90 55.6
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.9e-11 74.7 136 41.9
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.2e-10 72.0 408 29.2
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 2.7e-10 70.9 370 29.2
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 3.5e-10 70.5 169 35.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.5e-10 70.5 356 28.9
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.0e-10 69.7 163 35.6
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.7e-09 68.2 235 29.8
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 3.9e-09 67.0 464 27.4
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 3.9e-09 67.0 110 39.1
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 5.1e-09 66.6 223 34.1
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 6.6e-09 66.2 431 26.9
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.3e-07 62.0 125 37.6
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.8e-06 58.2 83 48.2
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 6.9e-06 56.2 141 34.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 9.0e-06 55.8 83 47.0


User provided reference genes

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