Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.0e-117 426.8 215 100.0
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.3e-85 320.1 217 78.3
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.3e-77 293.5 217 74.7
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.4e-66 256.9 218 65.6
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 2.2e-64 249.6 212 64.2
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.1e-63 247.3 222 65.3
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.6e-61 237.7 223 62.8
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.3e-56 223.8 224 63.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.8e-55 219.9 220 62.3
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.5e-52 209.5 220 58.2
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.5e-52 209.5 217 56.2
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 9.5e-52 207.6 222 59.5
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.1e-51 206.5 208 57.2
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 6.2e-51 204.9 219 58.0
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.4e-50 203.8 216 56.5
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.8e-50 203.4 216 56.5
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.1e-50 202.6 217 54.4
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.3e-48 197.2 216 54.2
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.4e-47 193.7 224 54.0
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.9e-47 193.4 224 54.0
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.4e-47 193.0 224 53.6
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 4.1e-47 192.2 235 55.7
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.2e-46 190.7 218 53.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.5e-46 189.1 214 50.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.5e-46 189.1 218 53.2
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 3.0e-45 186.0 214 51.4
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.5e-44 183.7 217 50.2
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.1e-43 179.9 217 47.9
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 4.7e-43 178.7 217 51.2
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.7e-43 178.7 217 52.1
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.8e-42 176.8 219 52.5
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.3e-42 176.4 218 48.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.5e-41 173.7 218 53.7
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 8.3e-40 167.9 221 53.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 8.3e-40 167.9 217 50.7
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-39 167.5 221 52.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 9.2e-39 164.5 218 52.3
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.0e-37 161.0 224 46.9
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.3e-37 160.6 217 47.0
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.7e-37 160.2 224 46.9
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.7e-37 160.2 218 49.1
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 8.6e-37 157.9 226 47.3
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 8.6e-37 157.9 205 47.8
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.5e-36 157.1 221 44.3
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 7.3e-36 154.8 216 48.1
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 6.2e-35 151.8 220 49.1
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.2e-35 151.8 220 49.1
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.1e-34 151.0 191 48.2
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.0e-34 149.1 223 46.2
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 6.8e-34 148.3 188 49.5
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 6.8e-34 148.3 215 47.9
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 7.6e-33 144.8 216 43.5
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.4e-32 141.4 215 46.0
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 8.4e-32 141.4 196 47.4
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.1e-31 139.0 222 48.2
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.1e-31 138.3 222 47.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.2e-31 137.9 222 49.5
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.2e-30 137.5 219 43.4
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.6e-30 137.1 214 42.1
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.5e-30 136.0 130 56.2
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 6.0e-30 135.2 223 44.4
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.7e-29 133.7 164 50.6
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.0e-29 132.9 164 48.2
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.6e-29 131.7 208 41.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-28 131.0 220 45.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-28 130.6 216 44.0
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 5.6e-28 128.6 219 42.9
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 5.6e-28 128.6 218 42.7
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 9.6e-28 127.9 220 41.8
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 9.6e-28 127.9 218 43.6
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-27 127.5 143 53.8
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.2e-27 125.2 214 44.4
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-26 124.4 219 40.6
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.8e-26 123.6 219 40.6
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.9e-26 121.7 212 37.7
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.9e-26 121.3 220 43.6
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 8.9e-26 121.3 250 41.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.9e-26 121.3 212 37.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-25 120.2 214 41.6
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.0e-25 120.2 247 42.1
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.6e-25 119.8 221 42.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.6e-25 119.8 218 42.7
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 7.6e-25 118.2 221 38.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.7e-24 117.1 223 42.6
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.2e-24 116.7 214 41.1
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.9e-24 116.3 222 41.9
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.9e-24 116.3 215 39.5
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.4e-23 114.0 221 38.9
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.9e-23 113.6 223 39.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.2e-23 112.8 216 38.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.2e-23 112.8 214 40.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.2e-23 112.5 141 49.6
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 4.2e-23 112.5 216 42.6
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 4.2e-23 112.5 216 42.6
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.1e-23 111.7 212 41.0
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 9.3e-23 111.3 222 37.8
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.1e-22 110.2 221 39.4
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.7e-22 109.8 234 37.2
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.8e-22 108.2 215 40.5
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 3.0e-21 106.3 226 38.9
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 5.1e-21 105.5 222 40.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 6.6e-21 105.1 232 40.1
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.5e-20 103.2 250 36.4
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.3e-20 102.8 218 36.7
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 9.6e-20 101.3 227 37.9
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 3.6e-19 99.4 226 37.6
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 6.2e-19 98.6 222 39.6
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 8.1e-19 98.2 227 35.7
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.4e-18 97.4 228 35.5
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 9.0e-18 94.7 147 44.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.0e-18 94.7 243 33.7
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.2e-17 94.4 223 37.7
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.5e-17 94.0 170 41.2
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.4e-17 92.8 124 46.0
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 7.6e-17 91.7 147 44.9
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.7e-16 90.5 210 37.1
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.9e-15 87.0 142 40.8
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 5.4e-15 85.5 218 36.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 7.1e-15 85.1 142 40.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 9.3e-15 84.7 226 34.1
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.2e-14 84.3 230 33.5
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.6e-14 84.0 210 31.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.7e-14 83.2 119 43.7
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.7e-14 83.2 129 42.6
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 3.5e-14 82.8 151 37.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 6.0e-14 82.0 119 42.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.3e-13 80.9 226 33.6
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.8e-13 80.5 141 36.9
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.8e-13 80.5 137 37.2
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.8e-13 80.5 121 38.8
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.0e-13 79.7 219 36.1
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 3.9e-13 79.3 242 36.4
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 6.7e-13 78.6 182 36.8
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-12 77.8 119 39.5
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-12 77.8 141 36.2
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-12 77.8 141 36.2
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.1e-12 77.8 119 39.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.1e-12 77.8 157 37.6
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.1e-12 77.8 217 32.7
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-12 77.4 155 36.8
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-12 77.4 155 36.8
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.5e-12 77.4 119 42.0
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.5e-12 77.4 207 33.8
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-12 77.0 156 37.8
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-12 76.6 157 38.2
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.5e-12 76.6 206 31.6
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 5.6e-12 75.5 176 35.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 7.4e-12 75.1 119 38.7
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 9.6e-12 74.7 157 36.9
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 1.6e-11 73.9 123 37.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.6e-11 72.8 156 35.3
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-11 72.8 156 35.3
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.1e-11 71.6 223 31.4
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-10 71.2 176 32.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-10 71.2 176 32.4
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-10 71.2 176 32.4
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 6.9e-10 68.6 61 60.7
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 9.0e-10 68.2 240 27.9
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.2e-09 67.8 229 27.5
Sed0005334 Sechium edule HOM05D004032 ORTHO05D004462 1.2e-09 67.8 178 36.5
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.5e-09 65.9 51 58.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.9e-08 63.2 247 31.2
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.9e-08 63.2 54 50.0
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 4.9e-08 62.4 38 68.4
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 6.4e-08 62.0 206 27.2
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.4e-07 60.8 113 34.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-07 60.5 57 52.6
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-07 60.5 88 42.0
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.2e-07 59.7 113 33.6
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 5.5e-07 58.9 208 27.9
CDE05G1157 Ceratophyllum demersum HOM05D007665 ORTHO05D008293 6.0e-06 55.5 242 27.7
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 6.0e-06 55.5 168 29.2


User provided reference genes

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