Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.7e-276 955.3 452 100.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.6e-250 869.0 447 90.2
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.8e-249 865.5 453 89.0
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.9e-249 864.4 451 89.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.9e-248 862.1 448 89.5
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.5e-248 861.7 450 89.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 9.7e-248 859.8 628 70.1
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.8e-246 855.5 451 88.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.1e-246 854.4 450 88.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 9.1e-246 853.2 451 88.0
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 9.1e-246 853.2 450 88.4
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.5e-245 852.4 453 88.1
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.4e-245 851.3 453 87.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.4e-245 851.3 453 87.4
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 5.9e-245 850.5 450 88.0
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.0e-244 849.7 449 88.4
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.0e-244 847.4 443 88.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.2e-243 844.7 447 88.6
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.2e-243 844.3 451 86.3
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 7.2e-243 843.6 450 88.0
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 3.6e-242 841.3 449 86.4
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 6.1e-242 840.5 453 86.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.0e-241 839.7 453 85.4
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-241 839.7 450 85.8
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 6.7e-241 837.0 447 87.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.1e-240 836.3 450 85.3
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.7e-240 833.9 443 87.4
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 7.4e-240 833.6 453 84.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 7.4e-240 833.6 447 85.2
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.4e-240 833.6 447 87.5
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.7e-239 832.4 453 85.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.8e-239 831.6 444 87.4
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.1e-238 829.7 449 87.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-238 828.9 447 86.6
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.4e-238 828.6 449 84.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.1e-238 828.2 447 86.4
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 5.3e-238 827.4 453 83.4
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 6.9e-238 827.0 450 84.9
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 9.1e-238 826.6 444 86.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.5e-237 825.9 540 74.6
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.6e-237 825.1 442 86.2
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.4e-237 824.7 444 86.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 7.7e-237 823.5 447 85.7
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.3e-236 822.8 528 75.6
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.3e-236 822.8 447 86.1
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.3e-236 822.8 472 82.0
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.2e-236 822.0 442 86.7
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.9e-236 821.6 449 85.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 3.8e-236 821.2 444 86.3
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.5e-236 820.1 457 84.7
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-235 819.7 446 85.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.5e-235 818.5 442 85.3
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.6e-234 815.8 448 84.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.6e-234 815.8 449 83.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 4.7e-234 814.3 447 85.5
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 6.1e-234 813.9 447 83.9
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.0e-233 813.1 447 85.0
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.4e-233 812.8 447 84.8
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.3e-233 812.0 447 84.1
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 3.9e-233 811.2 450 85.8
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 6.7e-233 810.4 450 84.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.8e-233 810.1 443 84.0
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 3.3e-232 808.1 442 84.2
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 9.7e-232 806.6 444 85.4
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 9.7e-232 806.6 444 84.5
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 9.7e-232 806.6 443 84.0
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.3e-231 806.2 450 83.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.7e-231 805.8 447 84.1
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 4.8e-231 804.3 443 84.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-230 803.1 446 83.2
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.4e-230 802.7 444 84.5
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.4e-230 802.0 440 83.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.1e-230 801.2 506 75.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.2e-229 799.7 447 83.0
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.0e-229 798.9 444 82.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.0e-229 798.9 453 82.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.6e-229 798.5 444 82.9
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.5e-229 797.7 447 83.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.7e-229 797.0 447 83.7
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.0e-228 796.6 447 82.3
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.0e-228 796.6 447 82.3
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.2e-228 795.4 446 82.1
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.9e-228 795.0 447 82.1
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.1e-227 793.1 447 81.9
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.5e-227 792.7 444 82.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.5e-227 792.7 447 81.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.5e-227 792.7 447 81.7
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.5e-227 792.0 448 82.4
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.6e-226 789.3 447 81.9
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.6e-226 789.3 444 82.7
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.1e-226 788.9 447 82.3
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.7e-226 788.5 447 81.7
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 2.7e-226 788.5 447 82.3
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 2.7e-226 788.5 447 82.3
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 8.0e-226 786.9 447 82.1
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-225 786.2 447 81.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.3e-225 785.4 447 81.7
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 2.3e-225 785.4 444 82.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 3.0e-225 785.0 482 78.0
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 6.3e-223 777.3 443 80.6
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.8e-222 775.8 443 80.4
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 5.5e-219 764.2 441 81.9
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.8e-217 759.2 444 80.2
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 4.4e-216 754.6 446 80.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.7e-216 754.2 443 81.5
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.2e-213 746.5 443 78.6
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.5e-213 745.0 406 84.5
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 2.3e-212 742.3 444 78.8
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.0e-209 733.4 447 77.6
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.9e-205 717.6 464 76.1
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.9e-204 715.3 380 87.6
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.1e-203 713.4 437 74.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.2e-197 693.3 440 73.4
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.6e-197 693.0 454 73.8
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.0e-196 690.3 444 72.3
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.1e-193 678.7 377 82.0
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.5e-192 676.4 382 81.7
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-190 670.2 448 73.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.8e-175 618.6 334 87.4
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.1e-172 608.2 446 69.1
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.4e-161 572.8 426 67.1
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-158 563.9 297 89.9
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.7e-154 548.9 460 63.9
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.0e-152 543.1 295 86.4
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 7.1e-150 534.6 310 78.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.5e-139 500.4 282 80.5
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 3.4e-136 489.2 459 58.4
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 9.1e-121 438.0 373 58.4
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-118 431.0 289 68.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.1e-102 377.9 274 66.1
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.7e-96 356.7 199 81.4
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-76 291.6 162 83.3
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-70 271.2 140 87.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 5.2e-68 262.7 150 77.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.0e-67 260.8 262 50.4
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.5e-67 258.8 149 77.9
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 7.1e-65 252.3 198 66.7
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.6e-64 249.6 147 79.6
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-63 247.3 147 75.5
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.3e-63 247.3 146 72.6
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-59 235.0 193 59.1
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.8e-53 213.0 135 76.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 2.1e-48 197.6 138 68.8
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 2.5e-46 190.7 110 83.6
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 8.4e-42 175.6 112 70.5
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 3.9e-39 166.8 132 59.1
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-31 141.7 71 90.1
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.5e-30 138.3 74 83.8
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.8e-29 134.0 78 79.5
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.8e-27 126.3 73 80.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 2.9e-26 124.0 72 76.4
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.3e-23 115.2 70 74.3
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.3e-22 110.2 55 89.1
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.8e-21 107.5 80 61.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 4.8e-21 106.7 83 57.8
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.9e-18 97.4 62 74.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.6e-16 90.5 71 62.0
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.1e-14 85.5 53 67.9
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.3e-14 83.6 67 55.2
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 7.4e-14 82.8 44 75.0
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 3.2e-09 67.4 159 30.2
Sabra07G0047000 Salix brachista HOM05D004306 ORTHO05D005055 9.4e-09 65.9 86 46.5
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.6e-08 65.1 36 77.8


User provided reference genes

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