Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.2e-191 671.8 383 100.0
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.1e-119 434.1 396 67.7
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 3.6e-118 429.1 330 77.3
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 3.6e-118 429.1 330 77.3
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.6e-105 387.1 400 64.5
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 9.5e-71 271.6 390 53.6
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.7e-56 224.2 380 45.3
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 9.6e-55 218.4 391 43.7
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 2.4e-53 213.8 361 44.3
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 7.6e-52 208.8 381 42.3
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-49 201.1 359 43.2
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 2.1e-49 200.7 378 44.4
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 2.1e-49 200.7 386 41.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.5e-49 199.9 358 45.0
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 7.9e-49 198.7 358 44.7
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 7.9e-49 198.7 379 46.7
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 6.6e-48 195.7 370 45.7
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 9.6e-47 191.8 379 39.8
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 9.6e-47 191.8 371 46.1
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 3.1e-45 186.8 369 42.3
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 5.3e-45 186.0 385 41.6
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 5.8e-44 182.6 376 42.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.6e-44 182.2 374 40.1
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.6e-44 182.2 363 41.6
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-42 177.9 380 38.9
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.2e-42 176.8 335 42.7
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.2e-41 174.9 378 42.1
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.7e-40 168.7 379 40.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.7e-40 168.7 379 40.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.3e-39 166.8 378 37.6
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.1e-38 164.1 377 37.1
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.8e-38 163.7 376 38.0
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 6.2e-38 162.5 382 38.7
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 5.3e-37 159.5 384 39.3
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.6e-36 157.1 394 36.8
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 3.4e-36 156.8 388 37.1
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.7e-35 154.5 345 42.0
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.9e-34 151.0 388 38.9
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.8e-32 144.4 367 39.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 8.7e-32 142.1 364 39.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 5.7e-31 139.4 385 37.9
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 4.1e-29 133.3 384 35.4
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 9.0e-29 132.1 391 35.0
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.2e-28 131.7 200 47.0
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 7.6e-28 129.0 351 37.0
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.0e-27 128.6 373 36.5
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.0e-27 128.6 374 36.1
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.0e-27 128.6 353 34.8
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.2e-27 127.5 371 35.0
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.9e-27 127.1 352 34.7
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.8e-27 126.7 385 33.8
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.8e-27 126.7 349 36.7
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.9e-26 124.4 393 34.4
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.2e-26 123.6 353 31.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.2e-26 123.6 393 34.1
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 9.3e-26 122.1 379 32.2
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.2e-25 121.7 213 42.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.1e-25 120.9 385 35.1
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.7e-25 120.6 385 35.1
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 3.6e-25 120.2 370 36.8
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 3.6e-25 120.2 362 34.8
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.3e-24 118.2 376 35.4
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 8.7e-24 115.5 360 32.8
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.1e-23 115.2 379 33.2
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.6e-22 111.3 373 33.8
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 2.2e-22 110.9 376 29.8
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 2.8e-22 110.5 373 34.6
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 3.7e-22 110.2 344 32.8
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.7e-22 110.2 360 34.4
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 6.3e-22 109.4 376 29.3
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 6.3e-22 109.4 386 30.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 8.2e-22 109.0 308 40.9
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 8.2e-22 109.0 391 32.5
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.1e-21 108.6 376 29.3
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.8e-21 107.8 385 31.7
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 6.9e-21 105.9 362 33.4
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 9.1e-21 105.5 340 35.0
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 2.0e-20 104.4 397 33.8
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 5.9e-20 102.8 383 29.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.0e-19 102.1 380 33.2
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 1.3e-19 101.7 370 28.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.7e-19 101.3 224 37.9
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.2e-19 100.9 364 37.9
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.4e-18 98.2 370 30.8
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.9e-18 97.8 352 32.4
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.2e-18 97.1 400 34.0
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 9.4e-18 95.5 210 41.0
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.4e-18 95.5 327 30.3
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.1e-17 94.4 327 31.2
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.7e-17 94.0 347 31.1
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.0e-16 90.5 335 29.6
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 6.7e-16 89.4 333 30.9
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 8.8e-16 89.0 370 29.7
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.1e-15 88.6 377 31.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 5.7e-15 86.3 219 34.2
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 9.7e-15 85.5 336 28.0
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 2.8e-14 84.0 214 38.8
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 4.8e-14 83.2 202 33.7
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 8.2e-14 82.4 383 28.7
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.1e-13 82.0 357 29.7
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.1e-13 82.0 266 31.6
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 3.1e-13 80.5 212 32.1
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 6.9e-13 79.3 207 34.3
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 1.5e-12 78.2 236 33.1
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 1.5e-12 78.2 236 33.1
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 1.5e-12 78.2 236 33.1
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 2.0e-12 77.8 390 26.2
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 4.5e-12 76.6 210 33.3
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 1.0e-11 75.5 210 33.3
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.3e-11 75.1 381 31.8
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.7e-11 74.7 365 26.0
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.2e-11 74.3 237 31.6
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 5.0e-11 73.2 237 31.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 5.0e-11 73.2 356 30.6
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 5.0e-11 73.2 346 26.3
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 8.5e-11 72.4 204 35.3
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 8.5e-11 72.4 202 36.6
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.4e-10 71.6 216 31.9
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 1.9e-10 71.2 300 29.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.9e-10 71.2 231 28.1
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 4.2e-10 70.1 209 31.6
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.2e-10 70.1 209 31.6
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 5.5e-10 69.7 320 26.9
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 5.5e-10 69.7 354 27.7
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.6e-09 68.2 354 28.0
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 1.6e-09 68.2 121 38.8
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 1.4e-08 65.1 213 32.4
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 2.3e-08 64.3 199 29.6
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.0e-08 63.9 236 30.5
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 3.0e-08 63.9 359 27.3
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.9e-08 63.5 375 28.8
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.1e-07 62.0 107 41.1
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 4.4e-07 60.1 292 29.8
SEGI_38417 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 1.3e-06 58.5 211 30.8


User provided reference genes

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