Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G142900 Populus trichocarpa HOM05D008343 ORTHO05D009841 2.1e-38 162.2 97 100.0
Potri.016G015600 Populus trichocarpa HOM05D008343 ORTHO05D009841 2.7e-30 135.2 98 74.5
Potri.007G049500 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.0e-29 133.3 98 73.5
Potri.006G008066 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.6e-19 99.4 81 69.1
Sabra06G0006300 Salix brachista HOM05D008343 ORTHO05D009841 3.1e-18 95.1 75 72.0
Lalb_Chr05g0226171 Lupinus albus HOM05D008343 ORTHO05D009841 1.3e-13 79.7 77 53.2
Nn1g04695 Nelumbo nucifera HOM05D008343 ORTHO05D009841 1.1e-12 76.6 79 51.9
Lj4g0017585 Lotus japonicus HOM05D008343 ORTHO05D009841 1.5e-12 76.3 81 54.3
Lalb_Chr16g0388911 Lupinus albus HOM05D008343 ORTHO05D009841 7.4e-12 73.9 79 53.2
Glyma.17G166600 Glycine max HOM05D008343 ORTHO05D009841 9.7e-12 73.6 73 47.9
QL06p040048 Quercus lobata HOM05D008343 ORTHO05D009841 9.7e-12 73.6 84 50.0
Prupe.6G228500 Prunus persica HOM05D008343 ORTHO05D009841 1.6e-11 72.8 67 59.7
TAR376G0584 Trochodendron aralioides HOM05D008343 ORTHO05D009841 4.8e-11 71.2 74 56.8
Dinv30037 Davidia involucrata HOM05D008343 ORTHO05D009841 6.3e-11 70.9 73 56.2
Eucgr.H02236 Eucalyptus grandis HOM05D008343 ORTHO05D009841 6.3e-11 70.9 68 52.9
Thecc.01G063900 Theobroma cacao HOM05D018273 ORTHO05D009841 1.4e-10 69.7 81 50.6
Dinv26871 Davidia involucrata HOM05D008343 ORTHO05D009841 2.4e-10 68.9 73 52.1
Eucgr.H02233 Eucalyptus grandis HOM05D008343 ORTHO05D009841 3.1e-10 68.6 68 51.5
MD15G1289400 Malus domestica HOM05D014781 ORTHO05D009841 4.1e-10 68.2 69 52.2
Glyma.05G099300 Glycine max HOM05D008343 ORTHO05D009841 5.3e-10 67.8 74 47.3
CiPaw.02G005800 Carya illinoinensis HOM05D008343 ORTHO05D009841 9.0e-10 67.0 73 50.7
Lj4g0018363 Lotus japonicus HOM05D008343 ORTHO05D009841 1.2e-09 66.6 77 49.4
GSVIVG01000214001 Vitis vinifera HOM05D008343 ORTHO05D009841 1.2e-09 66.6 72 50.0
CSS0015714 Camellia sinensis var. sinensis HOM05D008343 ORTHO05D009841 1.5e-09 66.2 70 52.9
Eucgr.H01293 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.0e-09 65.9 68 50.0
MD02G1179300 Malus domestica HOM05D008343 ORTHO05D009841 3.4e-09 65.1 69 52.2
FAN28G1184 Fragaria x ananassa HOM05D014781 ORTHO05D009841 5.9e-09 64.3 70 50.0
FAN28G2323 Fragaria x ananassa HOM05D014781 ORTHO05D009841 7.6e-09 63.9 70 50.0
FvH4_1g16830 Fragaria vesca HOM05D014781 ORTHO05D009841 1.3e-08 63.2 70 50.0
FAN19G0512 Fragaria x ananassa HOM05D014781 ORTHO05D009841 1.3e-08 63.2 70 50.0
FAN26G0261 Fragaria x ananassa HOM05D014781 ORTHO05D009841 1.3e-08 63.2 70 50.0
Ciclev10002816m.g Citrus clementina HOM05D016877 ORTHO05D011351 1.7e-08 62.8 78 47.4
Dinv30038 Davidia involucrata HOM05D008343 ORTHO05D009841 1.7e-08 62.8 66 57.6
Eucgr.H01292 Eucalyptus grandis HOM05D008343 ORTHO05D009841 5.0e-08 61.2 62 51.6
Eucgr.H02234 Eucalyptus grandis HOM05D008343 ORTHO05D009841 5.0e-08 61.2 62 50.0
Eucgr.H02237 Eucalyptus grandis HOM05D008343 ORTHO05D009841 5.0e-08 61.2 62 50.0
GSVIVG01032935001 Vitis vinifera HOM05D000114 ORTHO05D000075 5.0e-08 61.2 78 48.7
Eucgr.H02240 Eucalyptus grandis HOM05D008343 ORTHO05D009841 6.5e-08 60.8 62 50.0
TAR376G0451 Trochodendron aralioides HOM05D008343 ORTHO05D009841 8.5e-08 60.5 56 55.4
Manes.13G118000 Manihot esculenta HOM05D008343 ORTHO05D009841 1.1e-07 60.1 65 55.4
CiPaw.01G012500 Carya illinoinensis HOM05D008343 ORTHO05D009841 1.4e-07 59.7 66 50.0
Eucgr.H02229 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.4e-07 59.7 62 48.4
Aqoxy6G02858 Aquilegia oxysepala HOM05D008343 ORTHO05D009841 1.9e-07 59.3 74 47.3
Cpa.g.sc6.93 Carica papaya HOM05D008343 ORTHO05D009841 1.9e-07 59.3 67 47.8
Potri.007G049400 Populus trichocarpa HOM05D008343 ORTHO05D009841 3.2e-07 58.5 78 48.7
TAR376G1160 Trochodendron aralioides HOM05D008343 ORTHO05D009841 4.2e-07 58.2 51 56.9
CiPaw.15G050500 Carya illinoinensis HOM05D022916 ORTHO05D011351 5.5e-07 57.8 82 48.8
VMungo0251G2240 Vigna mungo HOM05D008343 ORTHO05D009841 5.5e-07 57.8 78 46.2
Prupe.3G151900 Prunus persica HOM05D008343 ORTHO05D009841 9.3e-07 57.0 53 54.7
QL06p040052 Quercus lobata HOM05D008343 ORTHO05D009841 9.3e-07 57.0 67 50.7
Peaxi162Scf00365g00064 Petunia axillaris HOM05D011430 ORTHO05D009841 1.2e-06 56.6 77 42.9
Eucgr.H02228 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.7e-06 55.5 68 47.1
Manes.12G110633 Manihot esculenta HOM05D008343 ORTHO05D009841 2.7e-06 55.5 65 52.3
RcHm_v2.0_Chr1g0340091 Rosa chinensis HOM05D014781 ORTHO05D009841 2.7e-06 55.5 64 48.4
Actinidia22664 Actinidia chinensis HOM05D016877 ORTHO05D011351 3.6e-06 55.1 62 46.8
COL.COLO4_11489 Corchorus olitorius HOM05D018273 ORTHO05D009841 3.6e-06 55.1 78 47.4
Haze_15346 Corylus avellana HOM05D008343 ORTHO05D009841 3.6e-06 55.1 57 52.6
Peaxi162Scf00365g00056 Petunia axillaris HOM05D011430 ORTHO05D009841 3.6e-06 55.1 88 44.3
Peaxi162Scf00365g00065 Petunia axillaris HOM05D011430 ORTHO05D009841 3.6e-06 55.1 77 42.9
RcHm_v2.0_Chr2g0106731 Rosa chinensis HOM05D014781 ORTHO05D009841 3.6e-06 55.1 68 47.1
MELO3C007588.2 Cucumis melo HOM05D024155 ORTHO05D010780 4.6e-06 54.7 102 43.1
Eucgr.H02243 Eucalyptus grandis HOM05D008343 ORTHO05D009841 6.1e-06 54.3 62 46.8
Peaxi162Scf00365g00051 Petunia axillaris HOM05D011430 ORTHO05D009841 6.1e-06 54.3 77 41.6
Ciclev10027017m.g Citrus clementina HOM05D008343 ORTHO05D009841 7.9e-06 53.9 79 44.3


User provided reference genes

Program Settings