Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 2675.6 1349 100.0
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 2115.9 1371 79.9
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1827.4 1300 75.0
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1552.3 1351 61.7
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1511.5 1358 60.6
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1458.7 1356 58.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1446.0 1355 58.5
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1445.3 1357 58.2
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1444.1 1329 57.9
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1436.0 1357 58.1
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1422.5 1328 58.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1415.6 1355 56.9
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1407.1 1346 57.0
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1403.7 1347 56.7
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1373.2 1354 56.2
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1364.7 1353 54.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1353.6 1343 56.4
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1348.6 1347 55.1
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1341.6 1357 55.7
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1338.9 1342 56.6
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1330.9 1339 56.3
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1327.0 1343 54.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1290.4 1349 53.7
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1280.8 1344 53.6
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1238.0 1360 52.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1206.4 1362 51.5
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1204.9 1344 50.1
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1202.2 1363 51.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1198.3 1362 50.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1197.6 1364 51.6
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1193.3 1268 54.2
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1179.9 1319 52.2
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1177.5 1329 50.4
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1172.5 1338 50.6
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1170.2 1200 53.9
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1168.3 1460 46.6
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1152.1 1344 49.9
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1140.9 1360 48.8
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1117.4 1359 46.9
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1085.1 1323 47.4
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1084.3 1323 48.2
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1081.2 1324 47.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1077.0 1348 48.3
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.8e-311 1073.2 1336 47.3
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.1e-306 1056.2 1342 46.9
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 6.8e-305 1051.2 1330 45.6
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.3e-303 1047.0 1330 45.6
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.7e-303 1046.6 1326 47.1
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.8e-303 1045.8 1343 45.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.4e-302 1042.7 1300 45.6
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 9.1e-302 1040.8 1337 46.9
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 9.1e-302 1040.8 1319 47.1
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 3.8e-300 1035.4 1328 47.5
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 8.6e-300 1034.2 1330 47.3
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.2e-298 1030.4 1246 47.5
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.4e-297 1026.9 1337 44.4
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 2.3e-297 1026.2 1333 44.7
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.2e-296 1023.8 1344 46.1
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.4e-294 1016.9 1342 44.3
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 2.3e-292 1009.6 1319 46.6
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.6e-291 1005.0 1323 45.4
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 2.3e-289 999.6 1346 44.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 5.7e-288 995.0 1242 47.2
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.4e-286 990.3 1322 45.2
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 3.0e-284 982.6 1348 45.5
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 3.9e-284 982.2 1292 45.2
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.3e-281 973.0 1319 45.4
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 8.9e-281 971.1 1352 43.6
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 7.8e-277 958.0 1348 44.0
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 4.6e-269 932.2 1347 43.6
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.9e-263 912.9 1361 41.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 9.2e-262 907.9 1335 42.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.5e-256 890.6 1317 41.8
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.6e-240 836.6 1320 39.5
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 3.2e-238 829.7 1344 39.9
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 3.1e-225 786.6 1341 39.8
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 5.9e-224 782.3 1333 38.8
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 7.6e-224 781.9 1353 38.6
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 8.5e-223 778.5 1096 44.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.0e-220 771.5 1334 38.2
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.9e-220 769.6 706 59.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.8e-210 736.9 706 60.5
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.3e-204 717.2 1332 37.0
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 8.8e-204 715.3 1303 37.8
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.4e-196 691.4 1341 37.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.6e-192 677.9 707 54.7
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 4.5e-192 676.4 1330 35.5
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 2.8e-186 657.1 1280 36.6
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 7.0e-185 652.5 1124 38.3
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.9e-184 649.4 1151 38.8
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 6.6e-183 646.0 1322 35.4
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.4e-180 638.3 1150 37.0
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.5e-179 634.8 694 53.9
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 4.4e-179 633.3 1272 35.8
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 4.7e-173 613.2 648 52.6
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.7e-167 594.7 652 49.7
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.3e-158 563.5 543 54.0
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.0e-156 557.0 791 44.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 2.8e-149 534.3 709 46.3
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 7.8e-144 516.2 800 42.9
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.2e-131 475.7 709 43.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.2e-114 418.3 777 35.3
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.3e-101 375.9 319 60.2
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 6.9e-100 370.2 905 34.4
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 9.4e-97 359.8 683 38.5
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 5.7e-94 350.5 648 37.3
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 8.2e-93 346.7 922 31.2
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.5e-89 335.9 914 30.6
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 6.3e-77 293.9 602 34.6
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.3e-74 286.2 884 30.9
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.6e-64 252.7 787 27.7
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 6.4e-53 214.2 191 64.4
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 9.8e-46 190.3 294 39.1
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.1e-43 182.6 590 31.9
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 4.3e-41 174.9 193 53.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.4e-39 169.9 280 38.2
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.4e-38 165.2 269 34.9
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 4.4e-38 164.9 572 30.8
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.5e-27 128.6 376 26.1
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-25 122.9 274 40.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-25 122.9 274 40.9
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.1e-24 119.4 562 28.5
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.1e-23 115.5 383 28.7
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.4e-22 112.1 571 26.6
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 6.4e-21 107.8 227 34.4
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.4e-20 105.9 246 35.8
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 5.4e-20 104.8 584 26.2
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.9e-17 96.3 139 36.0
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 9.6e-17 94.0 570 25.4
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 4.8e-16 91.7 214 37.9
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 6.2e-16 91.3 118 45.8
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 4.0e-15 88.6 544 26.7
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.2e-14 87.0 544 26.7
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 4.5e-14 85.1 116 41.4
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.1e-12 80.5 301 23.9
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 9.3e-12 77.4 522 26.8
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 9.3e-12 77.4 544 25.7
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 9.3e-12 77.4 522 26.8
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 5.1e-10 71.6 373 23.6
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 5.1e-10 71.6 72 45.8
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 7.4e-09 67.8 93 46.2
Nn6g33590 Nelumbo nucifera HOM05D052452 ORTHO05D006357 2.4e-07 62.8 128 37.5


User provided reference genes

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