Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 0.0e+00 1266.9 674 100.0
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 0.0e+00 1109.0 675 87.3
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 0.0e+00 1108.6 677 87.6
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 8.9e-290 1000.0 687 80.3
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 1.5e-281 972.6 687 77.4
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 7.6e-281 970.3 688 77.0
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 7.1e-279 963.8 724 74.6
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 6.6e-277 957.2 686 76.4
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 9.6e-276 953.4 688 76.3
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 1.4e-274 949.5 686 76.1
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 7.6e-273 943.7 683 77.5
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 2.2e-272 942.2 685 73.3
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 4.9e-272 941.0 688 75.4
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 8.4e-272 940.3 690 76.4
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 4.2e-271 937.9 691 75.5
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 1.0e-269 933.3 690 75.4
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 5.1e-269 931.0 687 74.7
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 9.6e-268 926.8 681 72.5
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 1.6e-267 926.0 687 75.3
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 6.2e-267 924.1 702 70.4
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 6.2e-267 924.1 689 75.5
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 1.2e-265 919.8 687 74.1
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.5e-265 919.5 686 73.9
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 4.5e-265 917.9 701 70.0
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 7.6e-265 917.1 685 73.7
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 7.6e-265 917.1 685 73.7
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 9.9e-265 916.8 686 73.9
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 1.7e-264 916.0 684 75.6
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 1.7e-264 916.0 688 74.1
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 4.2e-263 911.4 682 71.1
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 5.5e-263 911.0 714 69.6
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 2.1e-262 909.1 690 74.1
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.7e-262 908.7 688 74.4
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 4.6e-262 907.9 685 73.4
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 4.6e-262 907.9 688 74.1
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 6.0e-262 907.5 689 73.1
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 7.9e-262 907.1 685 71.7
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.3e-261 905.6 688 74.0
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 3.9e-261 904.8 686 73.0
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 1.1e-260 903.3 688 74.9
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 2.1e-259 899.0 689 73.3
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 4.8e-259 897.9 683 72.5
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 1.4e-258 896.3 673 73.8
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 1.4e-258 896.3 684 73.0
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 6.9e-258 894.0 685 73.6
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 6.9e-258 894.0 687 72.6
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 2.0e-257 892.5 688 73.3
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 3.4e-257 891.7 684 72.1
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 3.8e-256 888.3 683 70.4
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.4e-255 886.3 685 72.3
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.4e-255 886.3 685 72.3
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 1.4e-255 886.3 685 70.8
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 4.2e-255 884.8 688 72.5
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 7.1e-255 884.0 706 71.7
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 2.1e-254 882.5 703 68.7
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 4.6e-254 881.3 692 72.0
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 1.3e-253 879.8 689 72.7
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 3.0e-253 878.6 718 67.3
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 3.0e-253 878.6 703 68.3
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 3.0e-253 878.6 698 72.1
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.5e-252 876.3 689 72.9
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 2.5e-252 875.5 689 70.8
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 5.7e-252 874.4 686 71.4
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 6.3e-251 870.9 676 71.2
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 1.4e-250 869.8 688 69.5
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 3.1e-250 868.6 683 71.0
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 1.5e-249 866.3 684 71.2
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 1.5e-249 866.3 681 72.2
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 1.5e-249 866.3 692 71.4
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 3.4e-249 865.1 683 71.0
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 4.5e-249 864.8 698 68.1
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 4.5e-249 864.8 684 70.8
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 1.0e-248 863.6 692 71.0
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 2.2e-248 862.4 684 70.6
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 6.5e-248 860.9 683 69.0
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 6.5e-248 860.9 684 69.6
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 1.9e-247 859.4 688 70.8
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 4.2e-247 858.2 684 70.5
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 1.2e-246 856.7 705 67.5
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 3.6e-246 855.1 688 71.5
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 3.9e-245 851.7 701 67.0
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 1.5e-244 849.7 688 70.5
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 5.7e-244 847.8 688 71.1
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 1.1e-242 843.6 688 69.9
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 1.8e-242 842.8 695 69.2
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 1.8e-242 842.8 681 67.8
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 2.4e-242 842.4 688 69.8
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 2.4e-242 842.4 688 69.8
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 2.4e-242 842.4 690 70.6
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 5.3e-242 841.3 693 70.1
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 6.9e-242 840.9 688 69.6
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 6.9e-242 840.9 688 69.6
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 1.5e-241 839.7 690 70.1
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 2.5e-239 832.4 715 66.4
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 5.5e-239 831.2 702 65.5
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 2.1e-238 829.3 696 67.7
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 3.7e-235 818.5 696 66.1
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 1.8e-234 816.2 699 65.7
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 5.9e-233 811.2 681 67.3
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 1.2e-230 803.5 710 67.7
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 4.4e-228 795.0 744 61.7
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 3.7e-227 792.0 691 66.0
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 1.8e-226 789.6 684 67.0
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 1.0e-221 773.9 694 64.1
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 2.4e-218 762.7 705 63.0
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 5.0e-216 755.0 631 68.8
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 4.4e-212 741.9 686 61.4
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 8.3e-211 737.6 693 61.2
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 4.4e-204 715.3 699 57.8
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 9.5e-199 697.6 663 60.8
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 1.3e-187 660.6 529 71.5
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 4.9e-179 632.1 560 66.4
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 1.2e-172 610.9 596 64.3
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 9.6e-159 564.7 693 49.6
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 1.6e-158 563.9 715 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 2.4e-154 550.1 719 45.9
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 4.2e-146 522.7 536 59.3
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 4.6e-145 519.2 494 61.7
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 8.2e-142 508.4 699 46.8
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.9e-138 497.3 529 55.8
SHI23026 Sapria himalayana HOM05D003435 ORTHO05D004032 3.0e-136 490.0 539 54.9
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 4.6e-129 466.1 449 60.4
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.2e-105 388.3 348 61.8
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 3.6e-105 386.7 797 36.8
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 1.8e-104 384.4 809 37.0
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 5.2e-104 382.9 222 86.0
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.8e-96 357.8 258 73.3
GSVIVG01002593001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.1e-73 281.2 158 85.4
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 6.8e-72 276.2 234 64.5
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 1.5e-71 275.0 198 71.7
vmacro17936 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 7.5e-71 272.7 158 86.1
CDE05G0314 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.2e-65 255.4 157 79.6
SHI23027 Sapria himalayana HOM05D003435 ORTHO05D004032 4.4e-63 246.9 164 75.6
GSVIVG01004485001 Vitis vinifera HOM05D003435 ORTHO05D004032 5.4e-61 240.0 157 79.0
C01p29660 Brassica napus HOM05D003435 ORTHO05D004032 1.7e-43 181.8 213 54.9
BolC1t02908H Brassica oleracea HOM05D003435 ORTHO05D004032 1.7e-43 181.8 213 54.9
BcaC09g50042 Brassica carinata HOM05D003435 ORTHO05D004032 1.6e-41 175.3 135 68.1
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 4.9e-38 163.7 81 93.8
GSVIVG01002902001 Vitis vinifera HOM05D003435 ORTHO05D004032 5.4e-37 160.2 117 76.9
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 2.4e-32 144.8 170 50.6
Rhsim06G0113700 Rhododendron simsii HOM05D003435 ORTHO05D004032 6.9e-32 143.3 78 84.6
Psat6g176120 Pisum sativum HOM05D003435 ORTHO05D004032 8.4e-30 136.3 155 51.0
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 7.1e-29 133.3 65 96.9
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 1.0e-27 129.4 68 86.8
EL10Ac2g02709 Beta vulgaris HOM05D003435 ORTHO05D004032 1.8e-27 128.6 256 39.1
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 3.9e-27 127.5 167 46.1
COL.COLO4_18252 Corchorus olitorius HOM05D003435 ORTHO05D004032 4.5e-23 114.0 180 41.7
Psat5g056680 Pisum sativum HOM05D003435 ORTHO05D023081 5.8e-23 113.6 73 75.3
BcaB02g09979 Brassica carinata HOM05D003435 ORTHO05D004032 2.1e-20 105.1 69 75.4
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.5e-18 99.0 65 76.9
HPP92_006267 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.7e-14 85.5 200 32.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 8.5e-14 83.2 85 54.1
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 1.1e-13 82.8 61 75.4
HPP92_006266 Vanilla planifolia HOM05D003435 ORTHO05D004032 5.5e-13 80.5 106 47.2
Mapoly0072s0002 Marchantia polymorpha HOM05D003435 ORTHO05D004032 4.1e-08 64.3 57 54.4


User provided reference genes

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