Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 0.0e+00 2570.0 1321 100.0
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 0.0e+00 2092.0 1327 84.5
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 2.3e-201 707.2 1524 38.5
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 1.5e-115 422.2 1507 30.6
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 6.3e-114 416.8 1740 27.6
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.8e-113 415.2 1396 30.6
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 4.4e-107 394.0 1437 30.5
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 3.8e-103 380.9 1444 30.0
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.5e-102 379.0 1574 28.3
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 3.2e-97 361.3 1401 29.9
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 8.9e-92 343.2 1389 29.0
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 1.6e-88 332.4 1388 28.7
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 2.3e-84 318.5 1376 28.7
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 3.1e-84 318.2 1377 28.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 2.1e-80 305.4 1713 25.6
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 4.6e-80 304.3 1404 28.3
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.3e-78 298.1 1424 27.9
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 9.5e-78 296.6 1335 28.0
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 5.2e-76 290.8 1330 28.3
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 3.9e-71 274.6 1356 27.3
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 7.1e-65 253.8 1375 26.0
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.9e-63 248.1 1296 27.3
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 1.3e-61 243.0 1496 27.0
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 9.0e-60 236.9 1348 25.6
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.4e-58 230.7 1377 26.2
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 5.4e-57 227.6 1381 25.3
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 1.6e-56 226.1 1356 26.5
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.5e-54 219.5 1428 25.1
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.3e-53 216.5 1523 24.0
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 3.7e-53 214.9 1452 25.6
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 2.6e-51 208.8 1387 25.4
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 4.5e-51 208.0 1365 24.9
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 7.6e-51 207.2 1669 24.3
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 1.7e-50 206.1 1367 24.9
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 8.4e-50 203.8 1722 24.4
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 9.3e-49 200.3 1383 25.3
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.6e-48 199.5 1408 26.0
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 2.1e-48 199.1 1514 24.6
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 3.5e-48 198.4 1350 25.6
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 7.9e-48 197.2 1415 25.2
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 2.1e-45 189.1 1574 23.8
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.1e-44 186.8 1356 25.2
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 1.8e-44 186.0 1362 25.9
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 2.6e-43 182.2 1056 25.9
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 2.5e-41 175.6 248 43.1
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 4.2e-41 174.9 911 27.4
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.3e-37 163.3 1369 24.8
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.3e-37 163.3 1346 24.0
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.3e-34 153.3 1365 24.5
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 1.7e-34 152.9 294 38.4
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 2.2e-34 152.5 1338 24.1
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 2.2e-34 152.5 1347 23.3
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 5.0e-34 151.4 456 31.4
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 8.5e-34 150.6 1159 25.7
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.4e-33 149.8 1199 24.9
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 1.9e-33 149.4 1377 24.0
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 2.7e-32 145.6 1367 24.3
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 1.8e-31 142.9 1330 23.2
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 5.1e-31 141.4 1406 23.7
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 2.5e-30 139.0 504 29.6
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 4.3e-30 138.3 1318 22.1
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 5.7e-30 137.9 958 25.3
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.7e-29 136.3 1337 24.1
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 2.8e-29 135.6 1349 23.6
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 2.8e-29 135.6 1365 24.6
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 2.8e-29 135.6 179 49.2
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 3.7e-29 135.2 201 46.8
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 2.0e-27 129.4 1349 23.6
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 4.5e-27 128.3 200 42.0
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 1.3e-26 126.7 513 28.5
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.4e-25 123.2 1340 23.4
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.9e-25 122.9 1346 23.4
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 1.0e-23 117.1 112 54.5
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 1.4e-23 116.7 1337 23.6
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 1.4e-23 116.7 1378 23.7
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 1.1e-22 113.6 1213 23.4
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.0e-22 112.8 380 27.9
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 1.7e-21 109.8 149 47.0
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.2e-21 109.4 70 74.3
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.8e-21 109.0 252 33.7
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 2.8e-21 109.0 542 28.4
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 8.2e-21 107.5 1340 22.2
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.1e-20 107.1 204 36.3
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 1.1e-20 107.1 1534 21.9
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 3.5e-19 102.1 198 38.9
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 2.9e-18 99.0 368 31.8
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 2.9e-18 99.0 1328 22.3
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 3.8e-18 98.6 484 24.6
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 5.0e-18 98.2 174 40.2
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.1e-17 97.1 97 55.7
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 4.2e-17 95.1 1534 22.5
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 4.2e-17 95.1 65 66.2
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.7e-16 92.4 79 55.7
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 3.6e-16 92.0 404 27.7
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 4.7e-16 91.7 97 47.4
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 4.7e-16 91.7 79 55.7
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 8.8e-15 87.4 126 41.3
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 2.6e-14 85.9 213 31.9
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 4.8e-13 81.6 400 25.2
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 4.8e-13 81.6 157 35.0
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.3e-13 81.3 72 65.3
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-12 78.6 232 35.3
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.1e-12 78.6 236 33.9
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 5.3e-12 78.2 92 46.7
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.0e-10 73.9 172 37.2
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 1.7e-10 73.2 181 35.4
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.9e-10 72.4 77 48.1
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.9e-10 72.4 74 59.5
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 2.9e-10 72.4 109 40.4
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 6.5e-10 71.2 140 40.0
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.1e-08 66.2 230 28.3
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.7e-08 65.9 521 23.6
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 6.1e-08 64.7 480 24.6
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 5.2e-07 61.6 110 35.5
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.2e-06 60.5 205 33.2
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.2e-06 60.5 195 30.3
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 2.0e-06 59.7 267 28.1
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 2.0e-06 59.7 66 51.5
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 2.0e-06 59.7 82 41.5
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 4.4e-06 58.5 394 26.4
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 5.7e-06 58.2 167 30.5
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 9.7e-06 57.4 57 56.1
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 9.7e-06 57.4 309 26.9
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 9.7e-06 57.4 60 48.3


User provided reference genes

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