Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.1e-239 830.9 479 100.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.1e-180 637.1 477 79.5
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.3e-175 619.4 502 77.1
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 9.2e-148 527.7 489 64.0
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.4e-143 513.8 486 64.2
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 5.2e-143 511.9 481 67.8
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.0e-138 497.7 484 65.9
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 3.0e-138 496.1 428 65.7
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 3.9e-138 495.7 488 66.8
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.3e-136 490.7 476 63.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.6e-136 489.2 486 62.8
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.4e-134 482.6 493 62.3
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.9e-133 479.6 496 61.1
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.1e-132 477.6 487 64.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.9e-132 476.9 510 59.0
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.2e-131 474.2 486 65.2
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.1e-131 473.4 492 63.0
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.7e-130 470.3 493 60.6
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.1e-130 468.8 471 63.9
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.6e-130 468.4 471 63.9
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 6.6e-130 468.4 489 61.8
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 8.7e-130 468.0 471 63.9
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-129 467.2 492 62.4
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.3e-129 466.1 485 59.4
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 5.6e-129 465.3 491 60.5
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.6e-128 463.8 281 91.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 4.0e-127 459.1 485 58.4
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 9.0e-127 458.0 491 61.1
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 2.6e-126 456.4 481 61.7
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 4.5e-126 455.7 482 59.5
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 9.9e-126 454.5 485 62.3
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.3e-125 454.1 495 57.0
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 6.4e-125 451.8 486 61.9
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.4e-124 450.7 483 59.4
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.6e-123 447.2 483 59.6
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.6e-123 447.2 483 58.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 2.1e-123 446.8 492 57.3
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.0e-122 444.5 492 57.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.0e-122 444.5 480 59.6
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.3e-122 444.1 474 59.5
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 3.7e-120 436.0 495 58.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 4.8e-120 435.6 480 56.9
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 4.0e-119 432.6 471 60.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 4.5e-118 429.1 474 56.8
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.0e-117 427.9 420 63.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 4.9e-117 425.6 503 58.1
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 8.4e-117 424.9 487 56.7
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 3.2e-116 422.9 485 54.4
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 3.2e-116 422.9 472 57.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 4.2e-116 422.5 490 55.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.6e-115 420.6 480 54.6
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.7e-115 419.9 523 53.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 2.7e-115 419.9 478 56.7
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 8.7e-114 414.8 479 56.4
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.5e-113 414.1 481 57.4
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.5e-113 413.3 466 57.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.1e-111 407.9 478 57.3
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.4e-111 407.5 489 55.6
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 2.4e-111 406.8 493 54.8
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.5e-110 404.1 479 56.6
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.4e-110 402.9 520 55.6
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 5.9e-110 402.1 468 57.5
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.3e-109 401.0 480 54.0
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.0e-109 399.1 471 56.9
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.1e-108 397.9 505 51.1
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.5e-108 396.7 513 51.7
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.5e-108 396.7 484 57.2
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 5.5e-108 395.6 511 52.4
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.2e-107 394.4 342 71.9
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.6e-107 394.0 485 54.8
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.6e-107 392.5 503 54.9
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.6e-107 392.5 499 53.3
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.0e-106 391.3 385 62.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 6.7e-106 388.7 510 52.7
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.9e-105 387.1 493 56.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.3e-105 386.0 493 55.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.3e-105 386.0 499 52.5
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 9.7e-105 384.8 500 54.6
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 9.7e-105 384.8 582 47.1
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.6e-104 384.0 499 52.7
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 2.8e-104 383.3 505 54.9
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 3.7e-104 382.9 476 54.2
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.7e-104 382.9 469 55.7
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 6.3e-104 382.1 465 55.5
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.3e-104 382.1 469 55.7
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-103 380.9 364 62.6
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 3.1e-103 379.8 483 52.2
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 4.1e-103 379.4 504 52.6
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 4.1e-103 379.4 484 55.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.3e-103 379.0 471 53.5
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.0e-101 374.8 487 52.4
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 5.0e-101 372.5 483 51.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 6.5e-101 372.1 519 51.6
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 8.5e-101 371.7 479 50.5
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.9e-100 370.5 494 54.3
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.5e-100 370.2 468 51.3
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.0e-98 364.8 432 57.6
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.4e-98 364.4 493 51.3
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.3e-98 363.6 485 50.5
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 3.1e-95 353.2 462 54.5
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 2.9e-93 346.7 485 49.9
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.8e-93 346.3 480 50.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 7.2e-92 342.0 481 51.8
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.3e-90 337.0 474 51.9
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 5.1e-90 335.9 474 51.3
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 5.1e-90 335.9 573 44.5
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.6e-86 324.3 469 48.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.0e-86 323.9 483 48.0
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.8e-85 319.7 464 51.3
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 6.5e-85 318.9 390 56.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 5.5e-84 315.8 478 50.0
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 9.4e-84 315.1 420 52.6
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.1e-83 313.9 477 47.2
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 8.0e-83 312.0 483 47.4
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.0e-82 311.6 533 42.4
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.6e-81 307.0 481 50.1
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 4.1e-79 299.7 474 47.7
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.1e-79 299.7 474 45.6
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.2e-77 293.9 251 69.7
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.9e-76 290.8 262 66.0
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.2e-73 281.6 453 43.5
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 9.1e-71 271.9 173 86.1
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 7.7e-70 268.9 289 59.9
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.0e-66 258.5 431 45.9
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.0e-66 256.9 483 42.2
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 3.1e-63 246.9 449 45.4
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 6.8e-58 229.2 408 43.9
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.3e-53 214.9 294 55.4
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.6e-43 180.3 482 33.6
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.2e-41 175.3 458 31.9
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 9.8e-41 172.2 276 44.6
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 5.1e-29 133.3 409 29.6
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-27 128.3 100 72.0
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.4e-26 124.4 451 31.9
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.6e-25 120.9 82 80.5
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.7e-24 118.2 288 33.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 4.2e-23 113.6 192 41.1
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 7.8e-22 109.4 108 54.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 7.8e-22 109.4 66 78.8
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.3e-21 107.8 186 39.8
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 3.6e-19 100.5 76 67.1
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.0e-18 97.1 158 41.1
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 6.9e-18 96.3 179 36.9
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.0e-17 94.7 397 29.5
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 4.5e-17 93.6 177 48.0
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 9.9e-17 92.4 192 37.5
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 7.1e-15 86.3 179 34.6
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 7.1e-15 86.3 192 37.5
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.5e-14 84.0 145 40.0
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 2.1e-11 74.7 79 55.7
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 3.6e-11 73.9 321 27.4
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 4.0e-10 70.5 106 39.6
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.5e-09 68.6 158 45.6
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 3.4e-09 67.4 73 47.9
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 7.6e-09 66.2 312 27.9
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.7e-08 65.1 267 33.3
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 2.1e-06 58.2 53 58.5


User provided reference genes

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