Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.9e-36 155.2 74 100.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 2.5e-20 101.7 68 64.7
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 9.6e-20 99.8 68 63.2
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 9.6e-20 99.8 54 72.2
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-19 99.4 54 70.4
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 2.1e-19 98.6 57 64.9
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.1e-19 98.6 55 69.1
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.6e-19 97.8 52 73.1
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 6.2e-19 97.1 52 73.1
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 8.1e-19 96.7 52 73.1
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 8.1e-19 96.7 52 71.2
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 8.1e-19 96.7 52 71.2
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 8.1e-19 96.7 52 71.2
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.1e-18 96.3 46 80.4
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.4e-18 95.9 69 59.4
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.4e-18 95.1 55 63.6
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 5.3e-18 94.0 67 61.2
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 6.9e-18 93.6 54 68.5
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 6.9e-18 93.6 58 62.1
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 9.0e-18 93.2 68 61.8
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 9.0e-18 93.2 75 52.0
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.2e-17 92.8 70 58.6
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.5e-17 92.4 68 60.3
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.4e-17 91.3 68 61.8
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 4.5e-17 90.9 53 64.2
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 1.3e-16 89.4 52 67.3
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 2.9e-16 88.2 66 57.6
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 2.9e-16 88.2 55 58.2
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 2.9e-16 88.2 49 67.3
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 4.9e-16 87.4 72 55.6
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 6.4e-16 87.0 68 58.8
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 6.4e-16 87.0 74 50.0
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 6.4e-16 87.0 73 56.2
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 8.4e-16 86.7 72 51.4
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 7.1e-15 83.6 74 52.7
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 9.3e-15 83.2 70 52.9
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 9.3e-15 83.2 45 71.1
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.6e-14 82.4 55 58.2
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 3.5e-14 81.3 58 51.7
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 3.5e-14 81.3 44 65.9
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 6.0e-14 80.5 66 48.5
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.3e-13 79.3 59 50.8
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.3e-13 79.3 46 56.5
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 6.7e-13 77.0 43 60.5
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 8.7e-13 76.6 52 55.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.5e-12 75.9 59 50.8
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 2.5e-12 75.1 55 54.5
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 2.5e-12 75.1 55 54.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 5.6e-12 73.9 73 45.2
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 7.4e-12 73.6 56 50.0
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.6e-11 72.4 63 46.0
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 2.8e-11 71.6 71 40.8
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.7e-11 71.2 59 44.1
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 4.8e-11 70.9 57 49.1
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 6.2e-11 70.5 58 46.6
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 1.4e-10 69.3 43 58.1
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.8e-10 68.9 64 46.9
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 1.8e-10 68.9 66 39.4
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.4e-10 68.6 52 50.0
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 3.1e-10 68.2 52 50.0
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.1e-10 68.2 63 44.4
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 5.3e-10 67.4 43 53.5
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.3e-10 67.4 43 51.2
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.3e-10 67.4 43 55.8
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.9e-10 67.0 43 53.5
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.9e-10 67.0 57 45.6
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 6.9e-10 67.0 43 53.5
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 6.9e-10 67.0 54 44.4
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.9e-10 67.0 69 42.0
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 6.9e-10 67.0 57 43.9
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 9.0e-10 66.6 51 47.1
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-09 66.2 57 47.4
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.2e-09 66.2 65 43.1
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.0e-09 65.5 52 48.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.6e-09 65.1 43 53.5
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.4e-09 64.7 43 51.2
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.4e-09 64.7 43 51.2
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 5.8e-09 63.9 52 42.3
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 5.8e-09 63.9 37 64.9
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.0e-08 63.2 49 57.1
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.3e-08 62.8 53 43.4
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.2e-08 62.0 48 58.3
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 6.5e-08 60.5 43 46.5
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 3.5e-06 54.7 65 35.4


User provided reference genes

Program Settings