Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.1e-107 392.5 216 100.0
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.7e-85 319.7 187 85.0
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.3e-72 276.9 186 74.2
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.2e-67 260.4 192 70.3
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 4.7e-67 258.5 191 70.2
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.4e-63 246.9 195 65.1
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 3.2e-63 245.7 189 64.6
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.0e-61 240.7 190 62.6
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 7.3e-60 234.6 186 64.0
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.6e-59 233.4 193 62.2
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.4e-58 230.3 190 60.5
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.4e-58 230.3 186 62.9
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 6.8e-58 228.0 190 60.5
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 6.8e-58 228.0 219 60.3
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 8.9e-58 227.6 196 59.7
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 8.9e-58 227.6 186 61.8
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.5e-57 226.9 190 61.1
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 3.4e-57 225.7 186 60.8
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 1.3e-56 223.8 186 60.2
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 6.4e-56 221.5 195 60.5
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 6.4e-56 221.5 195 60.5
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 8.3e-56 221.1 190 59.5
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.4e-55 220.3 195 60.0
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.4e-55 220.3 195 60.0
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.4e-55 220.3 195 60.0
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 2.4e-55 219.5 187 61.5
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 3.2e-55 219.2 178 61.8
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.2e-54 217.2 191 58.1
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.6e-54 216.9 190 59.5
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.7e-54 216.1 187 58.3
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.0e-53 214.2 185 58.9
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.3e-52 208.8 184 60.3
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.6e-51 206.8 191 58.1
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.6e-51 206.8 189 59.3
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.8e-51 206.1 190 56.8
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 6.2e-51 204.9 190 58.9
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 1.1e-50 204.1 176 57.4
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.1e-50 204.1 191 59.2
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.3e-50 203.0 187 55.6
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 2.3e-50 203.0 277 46.2
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 3.1e-50 202.6 191 53.4
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 5.2e-50 201.8 191 53.9
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 6.8e-50 201.4 220 53.2
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 8.9e-50 201.1 186 56.5
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.5e-49 200.3 187 54.5
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.5e-49 200.3 190 55.8
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.5e-49 200.3 192 56.8
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 5.8e-49 198.4 185 55.1
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 7.6e-49 198.0 191 55.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 9.9e-49 197.6 186 55.9
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 9.9e-49 197.6 187 55.6
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.3e-48 197.2 191 55.5
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.3e-48 197.2 188 53.7
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 2.2e-48 196.4 216 50.5
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 2.2e-48 196.4 186 55.9
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 6.4e-48 194.9 186 55.4
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.1e-47 194.1 186 57.0
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.1e-47 194.1 187 51.9
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.1e-47 194.1 186 53.2
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.4e-47 193.0 187 55.6
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.4e-47 193.0 187 55.6
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 3.2e-47 192.6 189 53.4
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 5.4e-47 191.8 187 51.9
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 7.1e-47 191.4 184 54.3
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 9.2e-47 191.0 187 54.0
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.5e-46 189.1 187 55.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 4.6e-46 188.7 194 50.5
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 4.6e-46 188.7 187 54.5
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.7e-45 186.8 164 59.8
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.7e-45 186.8 187 50.3
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 3.0e-45 186.0 187 51.3
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 3.9e-45 185.7 187 52.4
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 6.6e-45 184.9 186 54.8
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 6.6e-45 184.9 189 52.4
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 8.6e-45 184.5 184 51.6
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.1e-44 184.1 187 51.3
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.9e-44 183.3 193 51.8
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.9e-44 183.3 192 53.1
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 3.3e-44 182.6 146 62.3
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.3e-44 182.2 178 51.1
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 4.7e-43 178.7 187 50.3
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.2e-43 178.3 189 52.4
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 8.1e-43 177.9 186 52.2
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.1e-42 177.6 192 49.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.8e-42 176.8 213 47.9
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.8e-42 176.8 187 49.2
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 5.2e-42 175.3 177 51.4
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 8.9e-42 174.5 168 56.5
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 3.4e-41 172.6 189 49.7
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.4e-41 172.2 177 50.8
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.3e-40 170.6 186 47.8
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 2.2e-40 169.9 177 50.8
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.2e-40 169.9 204 47.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 4.9e-40 168.7 206 45.6
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-39 167.5 177 50.3
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.9e-39 166.8 195 49.7
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.4e-39 166.4 195 46.2
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 2.4e-39 166.4 206 46.6
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 2.4e-39 166.4 189 47.1
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 7.1e-39 164.9 186 48.9
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 9.3e-39 164.5 188 46.8
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.2e-38 164.1 188 48.4
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.7e-38 162.9 186 49.5
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 7.8e-38 161.4 177 49.2
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.3e-37 160.6 190 45.8
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.7e-37 160.2 283 40.6
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 2.3e-37 159.8 177 49.2
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 3.0e-37 159.5 146 56.8
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 5.1e-37 158.7 184 47.3
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.9e-36 156.8 185 46.5
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.5e-36 156.4 184 47.3
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 3.3e-36 156.0 177 47.5
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 1.6e-35 153.7 207 43.0
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.4e-34 149.8 143 57.3
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 3.1e-34 149.4 146 53.4
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.5e-33 147.1 148 52.0
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 2.9e-32 142.9 190 47.4
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.9e-32 142.1 190 46.8
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.4e-32 141.7 190 46.8
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 6.4e-32 141.7 113 62.8
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 8.4e-32 141.4 187 42.2
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 1.9e-31 140.2 176 44.3
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.6e-30 137.1 178 42.7
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 7.9e-30 134.8 195 41.5
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 3.0e-29 132.9 187 41.2
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.9e-28 130.2 184 42.9
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 7.4e-28 128.3 158 49.4
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 9.6e-28 127.9 155 47.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 4.8e-27 125.6 146 44.5
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 4.8e-27 125.6 143 47.6
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 6.9e-26 121.7 177 41.8
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.2e-25 120.9 93 61.3
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 7.6e-25 118.2 186 38.7
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.7e-24 117.1 113 52.2
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 2.2e-24 116.7 159 42.8
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 4.9e-24 115.5 193 39.4
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 1.1e-23 114.4 117 50.4
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.9e-23 113.6 146 40.4
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 5.5e-23 112.1 117 49.6
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.9e-20 103.6 111 49.5
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.4e-20 101.7 93 58.1
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.3e-19 100.9 199 32.7
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 2.1e-19 100.1 159 39.6
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.8e-19 99.8 196 33.2
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 5.3e-18 95.5 91 50.5
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.9e-18 95.1 178 37.6
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.2e-17 94.4 142 40.8
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 1.5e-17 94.0 109 45.0
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 4.9e-16 89.0 62 62.9
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 3.5e-14 82.8 242 28.5
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.5e-14 82.8 77 50.6
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.3e-13 80.9 57 64.9
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.5e-09 67.4 42 71.4
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 4.5e-09 65.9 141 36.9


User provided reference genes

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