Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 6.2e-98 360.9 200 100.0
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.5e-83 312.4 188 89.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 4.3e-83 311.6 196 86.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 6.3e-74 281.2 198 78.8
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.4e-72 275.4 198 76.3
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.5e-71 271.2 198 74.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.5e-71 270.8 199 74.4
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 3.2e-70 268.9 199 75.4
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 4.2e-70 268.5 200 74.5
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.2e-69 266.9 199 74.9
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.7e-69 265.8 200 74.0
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 3.6e-69 265.4 201 74.1
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.8e-68 263.1 193 76.7
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 2.3e-68 262.7 200 72.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.0e-68 262.3 200 74.5
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 3.9e-68 261.9 199 72.4
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.1e-67 260.4 186 76.3
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.5e-67 260.0 200 74.5
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 2.0e-67 259.6 199 73.4
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.0e-67 259.6 200 71.5
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.3e-67 258.8 199 72.9
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 5.7e-67 258.1 199 73.4
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 9.7e-67 257.3 195 73.3
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 9.7e-67 257.3 199 71.4
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.3e-66 256.9 196 72.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.7e-66 256.5 195 74.9
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.2e-66 256.1 199 72.4
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.8e-66 255.0 199 71.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.1e-65 253.8 195 72.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.1e-65 253.8 199 71.9
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.1e-65 253.8 193 71.0
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.8e-65 253.1 193 73.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 2.4e-65 252.7 197 72.1
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.1e-65 251.9 199 68.3
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 4.1e-65 251.9 198 70.7
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.2e-64 250.4 199 71.9
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.2e-64 250.4 193 72.5
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.6e-64 249.2 192 71.4
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 3.5e-64 248.8 199 71.9
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.9e-64 248.1 199 69.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.9e-64 248.1 187 70.6
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.0e-63 247.3 188 72.3
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.9e-63 245.7 199 68.8
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 3.8e-63 245.4 201 68.7
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 6.5e-63 244.6 209 68.9
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.1e-62 243.8 219 65.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.1e-62 243.8 199 70.4
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 7.2e-62 241.1 194 71.6
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 7.2e-62 241.1 203 68.5
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 7.2e-62 241.1 199 70.4
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 9.4e-62 240.7 195 67.2
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.2e-61 240.4 194 68.6
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.6e-61 240.0 192 69.3
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.1e-61 239.6 195 69.7
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.1e-61 239.6 192 68.2
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 2.1e-61 239.6 187 67.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.2e-59 233.8 195 67.7
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 2.0e-59 233.0 189 68.3
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 4.4e-59 231.9 196 67.9
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 7.5e-59 231.1 189 67.7
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.3e-58 230.3 188 67.6
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 8.2e-58 227.6 222 58.6
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.1e-57 227.3 223 58.3
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.4e-57 226.1 198 65.2
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 4.1e-57 225.3 189 65.1
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.6e-56 223.4 188 64.9
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.6e-56 223.4 190 65.8
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.0e-55 220.7 197 63.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.3e-55 220.3 228 57.0
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 2.2e-55 219.5 190 65.8
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.0e-55 218.4 193 64.8
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 8.5e-55 217.6 202 61.9
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.5e-54 216.1 199 61.3
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.5e-54 216.1 199 61.3
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.5e-54 216.1 199 61.3
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 4.2e-54 215.3 189 63.0
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 7.2e-54 214.5 194 65.5
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 9.4e-54 214.2 201 64.2
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 6.1e-53 211.5 191 61.8
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 6.1e-53 211.5 191 61.8
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 6.1e-53 211.5 191 61.8
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.1e-53 211.5 199 61.8
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.4e-52 210.3 151 75.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.8e-52 209.9 181 64.1
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.8e-52 209.9 151 79.5
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.0e-52 209.1 192 60.4
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.0e-52 209.1 173 64.2
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.0e-52 209.1 151 75.5
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 8.8e-52 207.6 182 61.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.5e-51 206.8 195 61.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 5.7e-51 204.9 196 60.7
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 9.8e-51 204.1 189 63.0
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 9.8e-51 204.1 174 64.9
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.3e-50 203.8 212 57.5
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.3e-50 203.8 205 59.5
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-50 203.4 162 67.9
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 3.7e-50 202.2 204 59.3
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 6.3e-50 201.4 246 52.0
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 8.3e-50 201.1 186 61.8
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.1e-49 200.7 127 82.7
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.8e-49 199.9 198 60.6
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-49 199.9 152 69.7
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.2e-48 197.2 198 59.1
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 3.8e-47 192.2 144 70.1
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.1e-45 186.4 142 71.8
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 8.0e-45 184.5 189 54.0
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 4.4e-43 178.7 181 53.0
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 7.5e-43 177.9 170 57.6
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.8e-42 176.0 126 72.2
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 3.1e-41 172.6 116 75.0
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.6e-40 170.2 200 56.5
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 2.7e-40 169.5 121 71.9
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.1e-38 164.1 110 70.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 4.3e-38 162.2 138 68.8
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 4.6e-32 142.1 123 67.5
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.1e-28 129.4 114 64.0
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.8e-28 128.3 115 58.3
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.8e-28 128.3 85 77.6
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.4e-27 125.9 85 76.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 6.4e-26 121.7 202 38.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.3e-26 121.3 85 74.1
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-25 120.6 100 68.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 3.2e-25 119.4 179 38.0
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.6e-24 115.5 187 36.9
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.6e-21 107.1 97 60.8
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.1e-21 106.7 152 47.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.6e-21 105.9 150 48.7
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.4e-20 104.0 122 49.2
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 4.0e-20 102.4 160 45.6
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 6.8e-20 101.7 99 59.6
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 3.2e-17 92.8 68 70.6
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.4e-17 92.0 79 63.3
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 6.0e-16 88.6 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 7.8e-16 88.2 141 38.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 8.6e-15 84.7 109 36.7
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.3e-07 60.1 83 45.8
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 1.1e-06 57.8 63 54.0


User provided reference genes

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