Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.1e-251 872.8 444 100.0
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 4.0e-238 827.8 446 94.8
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.0e-198 694.9 441 81.6
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.5e-197 693.0 457 79.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.6e-197 692.2 456 79.6
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 2.6e-197 692.2 458 78.6
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 5.8e-197 691.0 425 83.1
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.7e-196 689.5 441 80.3
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.9e-196 688.7 461 78.1
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 6.5e-196 687.6 441 79.8
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 6.5e-196 687.6 460 78.0
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 7.1e-195 684.1 463 77.5
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.2e-194 683.3 366 92.3
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 6.0e-194 681.0 460 78.7
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 6.0e-194 681.0 446 79.6
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 7.9e-194 680.6 451 79.6
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.0e-193 680.2 460 77.2
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.8e-193 679.5 453 79.2
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.8e-193 679.5 451 79.6
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 2.3e-193 679.1 453 78.6
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 3.0e-193 678.7 453 77.9
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 6.7e-193 677.6 446 79.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.9e-192 676.0 387 87.6
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.9e-192 676.0 444 79.7
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 3.3e-192 675.2 443 78.1
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 4.3e-192 674.9 454 77.5
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 5.7e-192 674.5 386 86.3
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 7.4e-192 674.1 452 79.2
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.6e-191 672.9 389 85.1
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.2e-191 672.5 444 79.3
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.2e-191 672.5 444 79.3
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.2e-191 672.5 450 76.9
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 2.8e-191 672.2 457 76.6
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.8e-191 672.2 390 85.9
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 8.2e-191 670.6 442 79.6
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.4e-190 669.8 455 78.2
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.4e-190 669.8 427 79.9
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 1.8e-190 669.5 441 78.9
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.8e-190 669.5 437 77.3
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.4e-190 669.1 416 81.2
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 5.3e-190 667.9 447 77.6
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 5.3e-190 667.9 452 77.9
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 6.9e-190 667.5 450 78.2
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.5e-189 666.4 391 84.7
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.5e-189 666.4 437 76.9
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.0e-189 666.0 460 77.0
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.4e-189 665.2 450 76.2
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.4e-189 665.2 452 75.9
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 3.4e-189 665.2 447 78.3
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 4.5e-189 664.8 445 76.2
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 4.5e-189 664.8 453 76.6
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 5.9e-189 664.5 438 77.9
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.9e-189 664.5 450 75.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 5.9e-189 664.5 398 84.7
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 7.7e-189 664.1 457 76.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.0e-188 663.7 456 76.5
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.0e-188 663.7 451 76.1
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.3e-188 663.3 464 74.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.7e-188 662.9 458 77.1
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 2.9e-188 662.1 450 77.1
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 5.0e-188 661.4 448 77.2
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 5.0e-188 661.4 388 84.5
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 6.5e-188 661.0 452 75.4
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.1e-187 660.2 401 81.8
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.1e-187 660.2 449 77.1
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.9e-187 659.4 449 77.5
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.5e-187 659.1 437 76.4
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.5e-187 659.1 447 76.5
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 3.2e-187 658.7 447 76.5
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 3.2e-187 658.7 421 80.3
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 3.2e-187 658.7 438 76.7
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 3.2e-187 658.7 438 76.5
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 5.5e-187 657.9 453 75.9
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 9.4e-187 657.1 448 76.8
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 9.4e-187 657.1 444 77.7
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 9.4e-187 657.1 511 68.9
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.2e-186 656.8 441 76.9
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 2.1e-186 656.0 457 73.7
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 7.9e-186 654.1 448 75.9
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 7.9e-186 654.1 412 79.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.0e-185 653.7 446 76.2
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.4e-185 653.3 467 74.3
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.4e-185 653.3 429 77.2
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 3.0e-185 652.1 446 75.6
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 6.7e-185 651.0 452 75.4
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 8.8e-185 650.6 447 75.6
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 8.8e-185 650.6 447 75.6
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 8.8e-185 650.6 446 75.6
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 8.8e-185 650.6 371 87.3
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.5e-184 649.8 448 75.7
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.5e-184 649.8 468 73.3
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.3e-184 648.7 368 86.1
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 5.7e-184 647.9 384 83.9
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.2e-183 646.0 448 75.7
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.8e-183 645.6 455 74.1
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.3e-180 636.7 383 81.5
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.2e-180 636.0 389 79.7
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.9e-180 635.6 402 78.6
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 8.5e-180 634.0 387 79.8
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 8.5e-180 634.0 389 80.2
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-178 630.2 428 76.9
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 3.5e-173 612.1 452 72.8
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 7.2e-171 604.4 328 91.2
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 9.4e-171 604.0 385 75.3
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.7e-167 593.2 364 78.0
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.2e-167 592.8 388 74.2
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 4.8e-167 591.7 385 74.3
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.8e-159 565.1 435 70.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 1.8e-158 563.1 359 78.6
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.4e-153 547.0 392 68.9
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 2.0e-152 543.1 427 68.9
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 1.1e-150 537.3 370 72.7
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.1e-150 535.4 287 92.0
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.8e-145 520.0 361 70.4
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 5.2e-145 518.5 338 82.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.4e-144 515.8 287 86.1
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 2.8e-143 512.7 500 57.6
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 4.0e-137 492.3 394 60.2
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.4e-136 489.2 374 70.1
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 3.3e-131 472.6 337 75.1
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.8e-130 469.5 374 62.0
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.0e-120 436.8 286 76.2
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.9e-118 430.3 233 91.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.9e-112 407.9 331 64.7
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 9.9e-112 407.9 437 55.6
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.0e-97 359.4 224 76.3
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.3e-87 327.8 256 66.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 2.6e-80 303.5 215 67.9
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 7.6e-80 302.0 318 47.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.3e-74 284.6 273 58.6
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 2.0e-72 277.3 246 60.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 6.5e-71 272.3 161 84.5
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.1e-67 261.5 355 43.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 4.1e-57 226.5 211 62.1
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 8.5e-55 218.8 367 40.1
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 5.7e-51 206.1 174 64.4
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.2e-46 189.1 184 59.8
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.4e-44 184.9 113 77.0
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.0e-28 132.1 83 73.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.0e-28 132.1 83 73.5
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 4.4e-27 126.7 77 77.9
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 3.7e-26 123.6 137 54.0
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 3.7e-26 123.6 137 54.0
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.2e-21 108.6 73 72.6
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.1e-21 107.8 69 71.0
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 5.2e-20 103.2 112 51.8
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.2e-19 102.1 75 66.7
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 8.3e-10 69.3 110 46.4
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.6e-08 65.1 37 78.4


User provided reference genes

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