Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 0.0e+00 1118.2 723 100.0
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 3.6e-289 998.0 708 91.4
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 4.9e-209 731.9 695 63.5
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 8.0e-204 714.5 734 66.9
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 7.5e-202 708.0 704 66.3
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 7.5e-202 708.0 704 66.3
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 9.2e-200 701.0 698 67.0
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.6e-198 694.9 726 65.2
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 4.9e-193 678.7 682 61.7
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.4e-192 677.2 698 64.6
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.8e-187 660.2 741 61.7
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.8e-187 660.2 680 59.3
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.9e-185 652.1 722 63.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 3.2e-184 649.4 724 61.5
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 9.2e-184 647.9 721 65.7
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 6.0e-183 645.2 694 63.8
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.0e-182 644.4 726 63.1
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.5e-181 639.8 710 61.1
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.6e-181 638.6 689 60.5
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 7.3e-181 638.3 688 67.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 4.0e-179 632.5 735 63.9
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 9.9e-178 627.9 730 62.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.8e-177 625.9 702 67.8
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.9e-176 623.6 741 61.9
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 5.4e-176 622.1 691 59.9
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.3e-174 617.5 714 56.0
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.3e-174 617.5 738 63.8
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.5e-173 614.0 708 63.4
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 2.8e-172 609.8 715 59.4
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 4.8e-172 609.0 733 61.9
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.4e-171 607.4 684 58.8
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.0e-170 603.6 712 67.0
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.6e-170 603.2 716 64.7
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 5.8e-170 602.1 750 61.9
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.9e-169 599.0 694 64.0
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.4e-169 598.6 680 61.3
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.2e-167 594.3 652 67.2
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 2.7e-167 593.2 715 56.5
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 4.6e-167 592.4 756 58.6
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.3e-164 584.3 691 60.9
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 2.8e-164 583.2 522 64.6
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 2.8e-164 583.2 719 60.5
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 6.2e-164 582.0 695 66.3
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 9.0e-163 578.2 746 59.7
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 3.2e-160 569.7 691 61.2
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.3e-158 564.3 716 58.0
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.9e-157 560.5 731 54.7
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 4.8e-156 555.8 641 63.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.1e-155 554.7 717 59.4
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.6e-154 550.1 739 56.2
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 4.5e-154 549.3 736 61.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.6e-154 548.5 733 60.3
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 1.3e-153 547.7 707 55.4
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.2e-153 547.0 735 54.8
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.9e-152 543.9 695 54.1
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.5e-152 542.3 709 58.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.6e-151 540.8 525 61.0
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.3e-150 537.0 710 53.0
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.1e-149 534.6 703 56.0
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.5e-149 533.5 696 60.9
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 4.3e-149 532.7 710 55.5
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 8.2e-148 528.5 750 56.3
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.8e-147 527.3 656 57.6
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 4.1e-147 526.2 744 56.6
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 6.9e-147 525.4 697 54.9
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.6e-146 523.5 709 56.0
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 1.3e-145 521.2 793 55.4
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 6.5e-145 518.8 687 57.9
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.1e-144 518.1 741 54.8
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 2.4e-139 500.4 574 58.7
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 3.1e-139 500.0 703 54.3
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.4e-136 491.1 731 52.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 4.2e-136 489.6 654 58.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.0e-134 483.4 720 50.1
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.0e-134 483.4 707 53.3
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 5.1e-134 482.6 758 53.7
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 9.7e-133 478.4 530 56.6
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.1e-131 473.0 559 53.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 8.5e-129 465.3 730 53.3
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 3.0e-126 456.8 773 52.9
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.6e-125 453.8 454 66.7
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 7.4e-125 452.2 523 58.1
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.8e-124 449.5 735 53.2
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.8e-123 447.6 740 50.1
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 4.5e-122 443.0 754 55.8
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.5e-120 437.2 535 53.8
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 4.7e-119 433.0 325 76.3
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.4e-118 431.4 602 46.8
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 8.8e-118 428.7 748 52.9
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-115 421.4 516 54.1
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.4e-115 420.6 739 50.9
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 5.3e-115 419.5 736 51.5
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.7e-113 414.5 724 52.6
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 3.8e-113 413.3 701 53.8
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.0e-113 412.9 714 47.6
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 2.5e-112 410.6 723 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 7.2e-112 409.1 728 46.6
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.0e-110 405.2 742 53.1
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 5.7e-109 399.4 410 66.3
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 6.3e-100 369.4 703 45.7
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.1e-99 366.7 703 46.4
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.9e-97 360.5 727 42.1
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 6.6e-97 359.4 388 63.7
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.1e-96 358.6 631 43.6
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.0e-94 350.5 697 48.1
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 9.2e-91 339.0 620 41.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 4.0e-86 323.6 557 42.9
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.8e-79 300.8 327 70.0
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.8e-78 298.1 490 44.5
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 6.0e-74 283.1 587 38.3
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 7.8e-74 282.7 232 70.7
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 3.1e-62 244.2 320 55.0
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.2e-60 238.0 200 58.0
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 4.3e-56 223.8 196 59.7
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 7.3e-56 223.0 733 32.3
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.3e-55 222.2 272 61.8
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.8e-53 213.4 262 53.4
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 8.4e-52 209.5 532 35.0
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 1.5e-48 198.7 586 33.3
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.0e-45 188.3 267 53.9
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.4e-43 181.4 409 35.7
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 3.3e-40 171.0 200 49.0
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 9.0e-38 162.9 802 30.4
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 8.4e-36 156.4 246 45.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.1e-30 139.4 117 66.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 1.5e-29 135.6 292 44.5
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 5.0e-28 130.6 101 72.3
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.1e-27 129.4 111 56.8
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-24 119.4 134 55.2
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 6.3e-23 113.6 191 43.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.2e-21 109.4 200 45.0
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 2.2e-20 105.1 82 62.2
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 2.9e-20 104.8 282 31.9
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 6.5e-20 103.6 99 48.5
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-19 102.8 78 57.7
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-19 102.8 78 57.7
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 4.2e-19 100.9 87 59.8
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.5e-19 100.5 320 32.8
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 5.1e-17 94.0 76 56.6
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.0e-16 92.0 164 39.0
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.6e-13 81.6 103 53.4
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 4.5e-13 80.9 74 54.1
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 6.5e-12 77.0 60 65.0
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.1e-11 76.3 81 49.4
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 6.7e-09 67.0 48 58.3
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 6.7e-09 67.0 62 53.2
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 9.7e-08 63.2 87 50.6
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 8.2e-07 60.1 87 48.3
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 1.1e-06 59.7 50 54.0
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 9.1e-06 56.6 33 69.7


User provided reference genes

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