Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.6e-193 677.2 386 100.0
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 8.7e-165 583.9 389 86.1
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.7e-155 552.0 391 82.4
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 3.7e-131 472.2 401 71.6
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.2e-124 450.7 398 68.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.5e-103 379.8 386 61.1
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.3e-99 367.5 386 59.1
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 3.7e-99 365.9 386 58.8
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.4e-98 364.0 386 58.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.4e-98 363.2 386 56.0
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 4.1e-98 362.5 387 60.2
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 5.4e-98 362.1 388 59.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.6e-97 359.0 386 55.7
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.7e-96 357.1 396 58.3
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.9e-95 353.6 383 58.2
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.6e-94 349.4 386 57.3
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.2e-92 344.4 336 69.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.0e-92 343.6 386 55.7
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 9.9e-92 341.3 389 58.1
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 3.8e-91 339.3 396 57.3
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.8e-91 339.3 365 56.7
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.4e-90 337.4 389 56.3
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.1e-89 333.6 387 57.1
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.0e-88 331.3 361 59.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 8.7e-88 328.2 388 54.4
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.7e-88 328.2 380 55.3
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 4.3e-87 325.9 380 55.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 7.3e-87 325.1 388 55.9
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 7.3e-87 325.1 390 55.1
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 9.6e-87 324.7 392 56.4
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 3.6e-86 322.8 384 53.1
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 3.6e-86 322.8 384 53.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 3.6e-86 322.8 388 54.1
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.1e-85 319.7 394 55.6
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.0e-85 319.3 396 55.3
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 5.8e-84 315.5 387 53.5
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-83 313.9 389 50.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-83 313.9 389 50.9
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.9e-83 313.2 394 53.6
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.9e-82 310.5 394 52.8
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.7e-81 306.6 391 52.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.3e-80 304.3 387 52.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.0e-80 303.1 394 53.0
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.9e-79 300.4 392 52.0
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.5e-79 300.1 394 52.8
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.3e-78 297.7 384 51.3
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.6e-78 297.4 388 51.8
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.6e-78 297.4 386 52.1
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.1e-77 294.7 390 50.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 5.8e-76 288.9 386 55.4
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 7.6e-76 288.5 404 51.0
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.9e-74 283.9 393 50.4
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.9e-74 283.9 391 50.4
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.6e-73 280.8 387 51.2
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.1e-73 280.4 389 47.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.6e-73 279.3 338 57.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.3e-70 271.2 395 47.8
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.8e-70 270.0 383 48.0
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 3.1e-69 266.5 385 48.8
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 9.9e-68 261.5 364 50.0
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-67 261.2 389 47.3
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.3e-67 261.2 358 52.8
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.3e-67 261.2 393 49.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.9e-67 259.2 358 52.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.4e-67 258.5 389 46.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.4e-67 258.5 358 53.9
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.4e-66 257.7 386 45.6
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.2e-66 256.5 394 48.0
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.2e-65 254.6 364 51.4
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.2e-65 254.6 388 47.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.7e-65 253.4 381 47.8
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.6e-65 252.7 385 46.5
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.0e-64 250.0 405 44.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 8.7e-64 248.4 404 45.0
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 4.3e-63 246.1 396 50.3
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.4e-61 240.4 389 49.9
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 6.9e-61 238.8 403 43.7
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.2e-60 238.0 374 44.7
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.4e-60 236.5 398 43.0
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 4.5e-60 236.1 403 42.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.8e-60 235.7 405 43.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 7.6e-60 235.3 402 42.0
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.7e-59 234.2 383 43.3
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.2e-59 233.8 404 42.8
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 7.1e-58 228.8 405 42.5
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.1e-57 227.3 389 47.6
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.0e-56 224.9 389 44.7
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 8.7e-56 221.9 392 44.4
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.3e-55 219.5 274 50.7
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 9.0e-53 211.8 389 45.2
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 9.0e-53 211.8 399 47.6
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 2.0e-52 210.7 386 41.2
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 2.0e-52 210.7 386 41.2
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.0e-51 208.4 389 39.6
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 5.0e-51 206.1 399 47.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.5e-50 202.6 386 41.7
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 6.1e-49 199.1 389 42.2
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.1e-49 199.1 398 44.2
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 7.9e-49 198.7 390 41.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.8e-48 197.6 388 42.3
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.8e-46 189.5 390 44.1
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.4e-45 187.2 391 43.0
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 6.9e-45 185.7 391 41.2
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.0e-43 181.8 394 40.4
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.0e-43 181.8 394 40.4
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.5e-42 177.2 387 39.0
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.2e-41 174.9 390 41.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.4e-39 166.4 394 42.4
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.7e-38 163.3 325 41.2
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.8e-38 162.9 330 42.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 6.3e-38 162.5 358 44.1
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 6.3e-38 162.5 325 41.2
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 8.2e-38 162.2 387 38.2
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 3.1e-37 160.2 328 43.6
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.0e-36 157.5 325 46.2
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.0e-35 155.2 400 36.2
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.5e-34 150.6 329 38.0
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 4.2e-34 149.8 392 38.0
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 7.2e-34 149.1 325 40.9
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.1e-33 147.5 393 35.9
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.4e-32 144.8 329 37.7
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.8e-32 144.4 387 35.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 2.3e-32 144.1 391 36.6
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 8.8e-32 142.1 327 43.1
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.1e-31 141.7 320 42.8
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.6e-31 140.6 391 36.1
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.7e-30 136.7 312 41.0
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 3.7e-30 136.7 312 41.3
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 3.7e-30 136.7 320 42.8
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.8e-30 136.3 170 58.2
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 8.2e-30 135.6 313 41.2
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 8.2e-30 135.6 320 44.4
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 8.2e-30 135.6 388 37.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.1e-29 135.2 313 41.5
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 5.9e-28 129.4 328 38.7
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.9e-28 129.4 192 48.4
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.5e-26 124.8 328 37.5
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.9e-26 124.4 383 33.9
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.5e-26 124.0 235 43.8
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 4.2e-26 123.2 320 42.5
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 4.2e-26 123.2 320 42.5
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.2e-22 110.9 377 32.4
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 7.0e-21 105.9 354 35.6
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.0e-20 104.4 234 41.9
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 3.5e-20 103.6 312 35.9
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 5.9e-20 102.8 307 36.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.0e-19 102.1 387 32.6
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.8e-19 100.1 168 45.2
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 5.5e-18 96.3 297 37.0
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.1e-17 94.4 312 38.5
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.4e-16 91.7 313 39.0
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.8e-16 91.3 311 33.4
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.3e-16 90.9 369 33.3
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.8e-16 89.0 140 55.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 8.3e-14 82.4 314 35.7
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 3.1e-13 80.5 314 34.1
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.5e-12 77.0 110 41.8
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 7.7e-12 75.9 380 33.4
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 6.6e-11 72.8 216 40.7
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 4.2e-10 70.1 208 41.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 4.2e-10 70.1 208 41.3
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 7.2e-10 69.3 380 31.3
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-08 65.1 229 36.2


User provided reference genes

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