Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 2.4e-122 442.2 221 100.0
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 3.1e-90 335.5 186 88.2
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 2.1e-86 322.8 185 83.2
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 3.3e-84 315.5 184 84.2
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 2.8e-83 312.4 183 82.0
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 2.8e-83 312.4 188 81.4
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 6.3e-83 311.2 183 83.6
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 1.4e-82 310.1 188 79.3
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.8e-82 309.7 184 83.7
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 3.1e-82 308.9 185 79.5
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 6.9e-82 307.8 184 79.9
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 9.0e-82 307.4 206 75.2
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 2.6e-81 305.8 184 80.4
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 5.9e-81 304.7 189 77.8
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 5.9e-81 304.7 184 79.9
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 7.7e-81 304.3 184 81.5
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 7.7e-81 304.3 188 77.1
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 1.3e-80 303.5 185 80.0
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 1.3e-80 303.5 185 78.9
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 1.3e-80 303.5 184 82.6
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.3e-80 303.5 184 80.4
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 2.2e-80 302.8 185 78.9
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 3.8e-80 302.0 185 78.4
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 6.5e-80 301.2 185 79.5
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 8.5e-80 300.8 183 80.9
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 1.1e-79 300.4 182 79.7
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 1.1e-79 300.4 229 68.1
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 1.4e-79 300.1 189 77.8
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 5.5e-79 298.1 183 78.7
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 9.4e-79 297.4 182 78.6
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 1.6e-78 296.6 185 78.4
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 2.1e-78 296.2 188 79.8
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 2.7e-78 295.8 185 80.0
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 3.6e-78 295.4 184 77.7
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 6.1e-78 294.7 189 75.7
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 6.1e-78 294.7 183 78.7
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 7.9e-78 294.3 183 76.0
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 1.4e-77 293.5 183 79.8
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 3.0e-77 292.4 183 77.6
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 6.7e-77 291.2 183 77.6
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 4.3e-76 288.5 185 74.1
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 5.7e-76 288.1 188 76.6
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 9.7e-76 287.3 183 74.3
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.3e-75 287.0 181 75.7
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 1.3e-75 287.0 185 74.1
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 1.7e-75 286.6 189 75.7
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 1.1e-74 283.9 193 68.9
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 2.4e-74 282.7 188 73.9
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 5.3e-74 281.6 184 75.5
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 6.9e-74 281.2 181 74.6
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.5e-73 280.0 181 74.0
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 1.5e-73 280.0 184 76.1
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 2.0e-73 279.6 173 80.3
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 1.7e-72 276.6 185 69.7
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 3.8e-72 275.4 185 71.4
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 3.8e-72 275.4 184 75.0
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 5.0e-72 275.0 173 76.3
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 6.5e-72 274.6 185 70.8
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 8.5e-72 274.2 181 71.8
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 1.4e-71 273.5 184 71.2
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 4.2e-71 271.9 188 68.6
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 5.5e-71 271.6 178 73.6
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 5.5e-71 271.6 165 79.4
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 7.9e-70 267.7 163 81.0
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 7.9e-70 267.7 163 81.0
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 6.7e-69 264.6 188 64.4
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 4.4e-68 261.9 216 61.6
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 9.7e-68 260.8 178 69.7
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 9.7e-68 260.8 150 82.7
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 6.3e-67 258.1 156 81.4
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 6.3e-67 258.1 187 66.3
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 8.2e-67 257.7 220 61.8
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 2.0e-65 253.1 150 80.0
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 7.7e-65 251.1 165 72.7
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 1.6e-62 243.4 151 76.2
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 2.1e-62 243.0 168 70.8
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 6.3e-59 231.5 196 61.7
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 3.1e-58 229.2 140 79.3
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 5.3e-58 228.4 140 78.6
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 7.7e-49 198.0 197 55.3
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.7e-48 196.8 118 77.1
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.2e-47 192.2 150 65.3
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.6e-46 190.3 125 72.8
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 6.8e-45 184.9 110 79.1
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 8.3e-43 177.9 123 67.5
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 2.7e-41 172.9 215 47.9
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 1.8e-37 160.2 101 74.3
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 4.9e-35 152.1 133 62.4
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.3e-32 143.3 135 57.8
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 4.3e-31 139.0 80 80.0
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 1.2e-30 137.5 86 79.1
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 4.4e-28 129.0 185 43.8
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 1.7e-27 127.1 71 83.1
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.1e-26 124.4 134 53.7
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.6e-25 120.6 70 81.4
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 3.3e-23 112.8 70 80.0
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 7.3e-23 111.7 192 39.1
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.5e-20 104.0 181 36.5
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.6e-20 103.2 130 38.5
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 5.8e-20 102.1 181 35.9
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 7.5e-20 101.7 60 80.0
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 8.3e-19 98.2 175 35.4
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 7.1e-18 95.1 72 66.7
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 6.0e-17 92.0 60 75.0
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 1.7e-16 90.5 84 58.3
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 1.7e-16 90.5 135 45.2
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 1.5e-15 87.4 165 37.6
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 6.8e-13 78.6 172 33.7
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 8.4e-11 71.6 59 61.0
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 4.1e-10 69.3 66 53.0
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 2.5e-07 60.1 33 81.8


User provided reference genes

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