Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 0.0e+00 1131.3 792 100.0
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.6e-306 1055.8 792 92.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 3.6e-221 772.3 800 66.5
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 7.0e-209 731.5 793 64.6
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.5e-198 696.4 836 60.3
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 6.8e-196 688.3 811 60.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.0e-195 686.8 802 65.3
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 3.5e-192 676.0 797 62.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 3.8e-191 672.5 804 63.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 2.5e-190 669.8 793 62.9
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 3.2e-190 669.5 798 62.4
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.5e-190 668.7 803 62.0
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 9.5e-190 667.9 767 58.5
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.1e-189 666.8 738 63.7
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 8.0e-189 664.8 800 56.5
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 8.0e-189 664.8 803 62.6
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.0e-188 664.5 795 61.6
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.0e-188 662.5 759 61.3
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 7.0e-185 651.7 736 64.5
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 7.0e-185 651.7 736 64.4
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.5e-184 649.4 800 58.0
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 8.6e-183 644.8 790 61.1
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.1e-182 644.4 803 60.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.2e-178 630.2 802 61.8
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.9e-178 629.8 797 58.7
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 8.3e-178 628.2 809 60.2
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 5.4e-177 625.5 802 63.8
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 7.0e-177 625.2 798 62.8
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 7.0e-177 625.2 803 63.8
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.2e-176 624.4 802 63.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 2.0e-176 623.6 512 70.1
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.5e-176 622.9 793 57.9
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 4.6e-176 622.5 797 62.5
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 6.6e-175 618.6 802 60.3
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.0e-172 611.3 801 57.2
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.0e-171 607.1 764 59.8
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 4.4e-171 605.9 805 60.2
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.4e-169 600.9 763 59.6
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.2e-168 597.8 809 57.5
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.6e-168 597.4 794 53.4
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 2.7e-168 596.7 752 61.4
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.3e-167 594.3 793 57.1
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 2.3e-167 593.6 764 58.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 3.9e-167 592.8 813 56.5
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.8e-165 586.6 798 57.3
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 2.2e-162 577.0 786 57.3
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.9e-162 576.6 763 60.8
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 3.7e-162 576.2 799 54.6
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.4e-161 573.5 728 57.7
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.2e-160 571.2 800 56.9
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.7e-159 567.4 760 58.4
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 8.6e-159 565.1 744 57.8
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 6.2e-157 558.9 801 57.8
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 8.9e-156 555.1 819 56.9
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 3.4e-155 553.1 810 57.4
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.3e-154 551.2 796 54.9
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 3.5e-152 543.1 791 55.0
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 3.5e-152 543.1 802 52.6
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.6e-152 542.7 800 55.0
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 6.0e-152 542.3 767 52.0
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-150 536.6 809 56.2
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-150 536.6 809 56.2
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.4e-148 531.2 789 52.3
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 2.4e-148 530.4 714 58.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 2.4e-148 530.4 714 58.3
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.6e-144 517.7 757 54.4
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.5e-144 516.5 774 49.7
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 3.5e-144 516.5 795 51.9
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 6.0e-144 515.8 806 55.5
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 7.3e-142 508.8 714 54.8
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 9.6e-142 508.4 799 50.1
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.8e-141 506.9 745 54.9
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 3.6e-141 506.5 855 50.4
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 4.8e-141 506.1 785 54.5
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 8.1e-141 505.4 788 50.3
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.1e-140 505.0 733 53.6
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 5.3e-140 502.7 721 54.1
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 6.9e-140 502.3 832 54.4
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.2e-139 501.5 772 51.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.7e-138 497.7 767 54.2
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.4e-137 494.6 755 51.3
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 9.3e-137 491.9 790 50.5
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 7.9e-136 488.8 808 51.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 2.3e-135 487.3 768 53.1
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 7.4e-134 482.3 800 52.8
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.8e-132 477.6 797 49.1
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 4.2e-129 466.5 741 51.3
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 7.1e-129 465.7 756 47.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 3.0e-127 460.3 788 48.7
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 6.7e-127 459.1 502 59.2
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 4.3e-126 456.4 792 50.8
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.0e-122 445.3 803 53.3
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.4e-121 441.4 788 47.1
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 3.5e-120 436.8 788 46.2
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 5.5e-113 412.9 783 53.9
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.5e-107 394.8 420 58.6
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.0e-106 392.1 544 47.6
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 4.5e-99 366.7 809 41.0
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 7.7e-99 365.9 773 45.8
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.1e-96 357.8 561 42.8
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 3.8e-90 337.0 557 42.9
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.3e-77 295.4 771 37.9
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 5.4e-76 290.0 562 38.8
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 3.6e-72 277.3 190 82.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 8.0e-72 276.2 222 70.7
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.4e-70 270.8 273 59.7
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.9e-67 260.0 255 61.2
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 9.5e-65 252.7 545 48.3
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.0e-63 249.2 515 39.4
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 3.0e-63 247.7 545 49.7
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 7.5e-62 243.0 202 67.8
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.8e-55 219.9 248 54.0
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.6e-50 203.0 132 85.6
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.2e-46 192.6 137 85.4
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 4.4e-46 190.7 512 45.1
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 4.1e-44 184.1 123 81.3
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 2.1e-43 181.8 242 54.1
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-36 158.7 350 36.6
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 7.1e-36 156.8 177 53.7
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.5e-33 149.1 166 57.8
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.6e-32 144.4 382 49.5
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.4e-23 115.2 280 59.6
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 5.4e-20 104.0 95 68.4
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.9e-17 95.5 78 60.3
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 3.3e-17 94.7 121 49.6
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 1.3e-16 92.8 285 55.1
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-16 92.4 79 67.1
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 3.7e-16 91.3 160 43.1
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 4.8e-16 90.9 56 85.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.2e-14 86.3 63 73.0
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 1.5e-14 85.9 63 73.0
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.1e-12 79.7 107 43.0
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.2e-12 78.2 147 44.9
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 6.7e-10 70.5 136 42.6
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 2.1e-08 65.5 47 78.7
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 6.2e-08 63.9 246 33.3
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.8e-07 62.4 51 60.8
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 2.4e-07 62.0 52 69.2
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 5.3e-07 60.8 66 53.0
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.0e-06 58.9 99 35.4
Oeu020654.1 Olea europaea HOM05D001343 ORTHO05D007223 2.6e-06 58.5 38 81.6
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 5.8e-06 57.4 95 36.8


User provided reference genes

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