Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1529.2 843 100.0
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1449.1 843 93.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1091.6 838 72.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1086.6 841 70.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1082.0 826 71.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1078.5 836 70.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1077.8 833 70.5
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.2e-311 1072.8 831 70.0
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.3e-311 1072.0 839 70.6
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 6.9e-311 1070.5 832 70.3
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.3e-309 1066.2 830 70.5
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.4e-308 1062.0 839 69.6
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.0e-308 1060.4 842 68.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 7.7e-307 1057.0 839 67.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 8.5e-306 1053.5 843 69.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.7e-304 1048.5 834 69.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 4.0e-303 1044.6 840 68.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.5e-302 1042.7 831 69.7
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 2.8e-301 1038.5 832 67.9
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 7.2e-297 1023.8 835 67.3
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 9.4e-297 1023.5 830 69.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 8.0e-296 1020.4 843 66.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.3e-295 1018.8 835 67.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 4.0e-295 1018.1 845 67.1
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.0e-295 1018.1 846 67.6
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 5.2e-295 1017.7 835 66.5
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 5.2e-295 1017.7 836 66.9
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.2e-294 1016.5 834 67.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.2e-294 1016.5 845 65.9
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.7e-294 1014.2 831 66.1
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 6.3e-293 1010.7 841 67.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 8.3e-293 1010.4 843 66.7
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 5.4e-292 1007.7 832 66.9
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.4e-292 1007.7 827 65.9
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 9.1e-292 1006.9 833 65.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.5e-291 1004.6 835 66.3
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 6.5e-290 1000.7 838 66.2
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.1e-289 1000.0 831 65.6
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.9e-289 999.2 836 65.8
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.1e-284 983.4 826 64.6
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.4e-284 981.1 836 64.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.7e-283 978.8 836 64.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 3.5e-283 978.4 833 65.1
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.0e-282 976.9 836 65.4
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.3e-281 971.8 841 64.1
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.5e-281 970.3 843 65.0
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.8e-279 966.1 857 63.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.5e-278 963.0 839 62.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.4e-276 956.4 843 64.3
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.2e-275 953.4 839 63.3
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.6e-274 947.6 844 62.1
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.8e-272 942.2 831 62.5
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-272 942.2 830 61.9
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.3e-269 930.6 840 61.2
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.9e-268 929.5 827 62.6
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 4.1e-268 928.3 836 60.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.2e-267 926.8 831 64.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.7e-267 925.6 845 61.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 7.8e-267 924.1 838 62.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.0e-266 922.2 844 61.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 2.5e-265 919.1 864 60.2
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.6e-265 917.9 836 61.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.6e-264 916.4 835 60.8
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.1e-263 913.7 834 61.8
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.2e-261 906.0 842 61.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.9e-261 905.6 835 62.0
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.1e-260 901.0 838 59.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.6e-259 899.8 837 61.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.3e-257 892.1 815 61.0
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 5.6e-257 891.3 833 59.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.4e-255 885.9 923 55.5
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.7e-253 879.8 840 59.0
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 3.2e-252 875.5 830 61.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 4.3e-249 865.1 838 59.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.3e-245 853.6 816 59.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.3e-245 853.6 840 58.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-244 850.5 816 59.7
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-244 850.5 816 59.7
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.0e-242 844.0 881 56.4
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.0e-242 842.4 841 57.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 8.7e-242 840.9 839 58.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.3e-241 839.0 836 57.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 7.3e-241 837.8 818 58.6
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 7.3e-241 837.8 818 58.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.3e-241 837.8 835 57.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.8e-240 835.9 861 55.7
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 8.1e-240 834.3 788 59.1
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.2e-237 826.2 872 54.8
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 9.3e-236 820.8 837 59.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.3e-234 816.2 834 57.0
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 8.4e-229 797.7 832 55.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.9e-225 786.6 829 55.5
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 7.1e-220 768.1 844 54.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.8e-216 756.1 683 61.2
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.4e-215 753.1 845 52.7
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 3.4e-214 749.2 673 61.5
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.2e-208 729.9 822 52.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 5.5e-204 715.3 850 49.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 2.1e-203 713.4 614 63.2
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.7e-200 703.7 840 51.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.6e-195 686.0 548 66.4
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-170 604.4 605 56.4
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 4.4e-169 599.4 599 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.5e-161 574.3 897 41.2
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 5.1e-149 532.7 453 64.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.2e-147 528.1 381 74.3
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.2e-139 501.5 900 37.7
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 4.7e-139 499.6 870 38.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 4.0e-138 496.5 846 39.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.0e-129 467.6 390 66.4
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.6e-124 448.7 487 53.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.8e-117 427.9 453 56.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.5e-111 406.4 449 54.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 7.9e-110 402.5 937 32.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.2e-107 392.5 310 67.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.8e-96 357.1 448 48.7
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.5e-92 345.1 293 63.1
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-87 328.9 243 72.4
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-85 322.4 236 73.3
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.3e-85 321.2 227 72.2
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.0e-85 320.9 332 56.6
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.2e-83 314.7 284 63.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-81 308.9 337 53.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-71 275.0 200 71.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 6.3e-67 260.0 268 58.6
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 9.4e-63 246.1 195 68.7
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.1e-62 245.0 212 61.3
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 7.5e-60 236.5 938 27.3
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.6e-54 217.6 155 69.7
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-50 206.1 182 62.1
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.6e-46 191.0 214 54.7
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-40 172.2 157 58.6
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.9e-40 171.0 158 56.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 5.8e-36 157.1 170 55.3
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.5e-31 142.5 179 48.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.1e-29 134.8 114 64.0
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 4.0e-29 134.4 510 26.3
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.4e-28 131.3 181 42.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 5.8e-28 130.6 637 24.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.2e-27 128.6 118 64.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.6e-25 120.9 120 60.0
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.0e-24 119.8 78 71.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 3.0e-24 118.2 127 56.7
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.9e-24 117.9 104 56.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.1e-23 116.3 611 25.0
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.2e-18 98.2 118 50.8
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.5e-17 94.7 76 67.1
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.3e-16 92.8 72 65.3
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 3.9e-16 91.3 157 48.4
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 5.6e-15 87.4 177 39.5
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 7.3e-15 87.0 160 46.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-13 83.2 50 76.0
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-12 79.3 131 43.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.4e-12 78.2 86 54.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.8e-12 77.4 56 66.1
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 2.2e-11 75.5 99 47.5
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.7e-08 65.9 51 60.8
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.1e-07 63.2 65 50.8


User provided reference genes

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