Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.6e-185 652.5 316 100.0
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.2e-164 583.2 322 88.8
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.7e-163 577.4 303 90.1
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 2.8e-161 572.0 307 87.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 3.1e-160 568.5 307 86.6
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 4.1e-160 568.2 307 87.9
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.6e-159 565.5 310 85.2
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 4.5e-159 564.7 324 84.9
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.3e-158 563.1 307 87.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.7e-158 562.8 306 86.9
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 6.5e-158 560.8 307 86.6
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.1e-157 560.1 307 86.0
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.5e-157 558.9 307 85.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 7.2e-157 557.4 308 86.0
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.2e-156 556.6 305 85.9
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.6e-156 556.2 307 86.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.1e-156 555.8 307 85.7
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.1e-156 555.8 306 85.0
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.7e-156 555.4 307 86.3
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 3.6e-156 555.1 307 85.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 3.6e-156 555.1 307 85.7
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 4.7e-156 554.7 332 81.6
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 6.7e-155 550.8 307 84.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 6.7e-155 550.8 315 81.3
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.0e-154 549.3 307 84.0
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.0e-154 549.3 307 83.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 4.4e-154 548.1 308 83.4
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 5.7e-154 547.7 307 84.4
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 5.7e-154 547.7 308 82.8
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 7.4e-154 547.4 309 83.8
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 9.7e-154 547.0 307 83.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.3e-153 546.6 307 83.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.7e-153 546.2 307 82.7
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.7e-153 546.2 307 83.4
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.7e-153 546.2 307 84.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.8e-153 545.4 307 83.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 2.8e-153 545.4 307 83.4
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 3.7e-153 545.0 307 84.0
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.7e-153 545.0 307 83.4
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.3e-153 544.3 308 82.1
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.2e-153 543.9 307 82.7
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-152 543.5 307 82.4
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.1e-152 543.5 307 83.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.1e-152 543.5 307 83.1
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 1.4e-152 543.1 307 82.7
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.4e-152 542.3 308 81.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.4e-152 542.3 307 82.7
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 7.0e-152 540.8 307 82.7
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 9.1e-152 540.4 307 82.1
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 9.1e-152 540.4 307 82.7
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-151 540.0 308 80.8
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.5e-151 539.7 305 83.6
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.5e-151 539.7 307 83.4
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.0e-151 539.3 307 82.7
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 4.5e-151 538.1 308 81.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.5e-151 538.1 307 82.7
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 4.5e-151 538.1 307 81.8
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 5.9e-151 537.7 309 80.6
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.3e-150 536.6 308 82.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.3e-150 536.6 310 80.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.7e-150 536.2 307 81.8
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 2.2e-150 535.8 307 83.1
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.9e-150 535.4 308 80.8
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.8e-150 535.0 307 81.8
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.0e-150 534.6 308 82.8
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 6.5e-150 534.3 307 82.7
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 8.5e-150 533.9 308 81.8
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.1e-149 533.5 308 79.5
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.1e-149 533.5 308 80.2
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-149 533.1 310 80.3
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-149 533.1 310 80.3
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.4e-149 533.1 310 80.3
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-149 532.7 310 80.0
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-149 532.7 308 79.5
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.9e-149 532.7 310 80.0
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.9e-149 532.7 307 80.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 3.2e-149 531.9 308 79.5
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 4.2e-149 531.6 307 82.4
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.7e-148 528.9 307 79.5
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.7e-148 528.9 296 84.1
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.7e-148 528.9 296 84.1
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.7e-148 528.1 301 83.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 6.1e-148 527.7 300 80.7
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.1e-148 527.7 311 79.4
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 8.0e-148 527.3 309 78.0
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-147 526.9 310 80.6
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 5.2e-147 524.6 328 75.3
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 5.2e-147 524.6 309 78.0
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 6.7e-147 524.2 309 77.7
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 8.8e-147 523.9 300 80.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 8.8e-147 523.9 307 80.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.5e-146 523.1 307 80.1
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.6e-146 522.3 307 79.2
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 7.4e-146 520.8 300 80.3
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.7e-145 519.6 308 76.3
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 3.7e-145 518.5 308 77.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.1e-144 516.9 297 79.8
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.1e-144 516.9 307 77.9
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.8e-144 516.2 334 74.6
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.1e-144 515.0 307 81.1
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 5.3e-144 514.6 309 77.3
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-143 513.5 308 78.2
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 7.7e-143 510.8 309 75.7
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.7e-142 509.6 312 75.0
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 6.5e-142 507.7 308 76.3
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.9e-141 506.1 287 84.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.9e-141 506.1 287 81.5
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 3.2e-141 505.4 320 74.7
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.5e-141 504.6 295 79.0
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.2e-139 498.0 308 76.0
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 6.8e-139 497.7 287 78.7
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 3.4e-138 495.4 313 77.6
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.1e-136 490.3 275 83.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 4.1e-136 488.4 294 75.2
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 9.1e-136 487.3 307 72.3
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.0e-135 486.1 300 76.7
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.3e-134 483.4 307 74.9
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.9e-134 482.3 281 80.4
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 5.2e-131 471.5 275 81.8
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 8.8e-131 470.7 307 73.6
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.2e-130 470.3 308 72.1
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.4e-130 468.4 264 84.5
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-126 457.2 257 82.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-126 457.2 257 82.1
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.5e-125 453.4 265 79.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 1.9e-125 453.0 287 77.4
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 7.2e-125 451.1 311 69.1
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.3e-123 446.0 241 88.8
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 5.2e-123 444.9 311 70.4
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.8e-121 439.1 287 69.3
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.0e-118 428.3 291 63.6
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 8.6e-118 427.6 307 63.2
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.0e-115 420.6 265 75.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 6.4e-113 411.4 265 78.5
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 5.4e-112 408.3 294 64.6
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.2e-111 407.1 323 58.8
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 6.6e-110 401.4 246 80.5
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 9.2e-104 380.9 289 60.2
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.2e-103 380.6 233 75.1
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 7.8e-103 377.9 285 63.9
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.3e-102 376.3 224 80.8
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.9e-96 356.7 287 61.3
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 4.0e-91 339.0 216 77.3
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.6e-90 336.3 233 68.7
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.6e-87 327.0 185 81.6
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.6e-87 325.5 185 81.6
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 4.3e-85 318.9 174 86.8
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 4.5e-74 282.3 196 74.5
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.2e-71 274.2 345 42.6
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-70 270.0 335 46.6
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 6.7e-70 268.5 219 63.9
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.3e-65 254.2 317 42.6
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.2e-63 247.7 297 46.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.8e-62 243.8 299 43.8
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.2e-52 210.3 153 70.6
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.6e-50 203.4 129 74.4
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 5.7e-45 185.7 337 35.9
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 5.0e-41 172.6 125 70.4
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 3.9e-38 162.9 131 68.7
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 2.6e-37 160.2 94 85.1
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 4.4e-37 159.5 92 85.9
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 2.2e-36 157.1 131 65.6
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 4.8e-36 156.0 92 83.7
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.8e-35 154.1 131 64.1
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 7.0e-35 152.1 94 80.9
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 3.0e-30 136.7 97 74.2
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.1e-27 126.3 64 89.1
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 5.3e-27 125.9 66 86.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 5.0e-25 119.4 333 27.6
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 3.2e-24 116.7 116 56.0
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 9.4e-24 115.2 133 51.9
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-23 114.8 92 68.5
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 4.0e-22 109.8 63 76.2
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.4e-19 101.3 61 73.8
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.8e-17 93.2 52 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 9.4e-16 88.6 243 30.5
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.6e-15 87.8 51 76.5
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 2.8e-12 77.0 41 82.9
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 6.3e-12 75.9 47 76.6
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.1e-11 75.1 74 52.7
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 4.5e-10 69.7 40 82.5
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.1e-08 65.1 43 65.1
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.1e-08 65.1 43 65.1
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.3e-08 63.5 35 85.7
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 4.2e-08 63.2 39 71.8
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 5.2e-06 56.2 58 39.7


User provided reference genes

Program Settings