Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G094700 Populus trichocarpa HOM05D007631 ORTHO05D009566 2.3e-131 472.2 235 100.0
Manes.04G066700 Manihot esculenta HOM05D007631 ORTHO05D009566 1.0e-83 313.9 238 68.1
TWI53G1419 Tripterygium wilfordii HOM05D007631 ORTHO05D009566 2.6e-79 299.3 237 65.0
CsaV3_3G031500 Cucumis sativus L. HOM05D007631 ORTHO05D009566 4.5e-79 298.5 235 65.1
CsaV3_3G032520 Cucumis sativus L. HOM05D007631 ORTHO05D009566 3.8e-78 295.4 235 64.3
Eucgr.J00853 Eucalyptus grandis HOM05D007631 ORTHO05D009566 1.8e-75 286.6 186 74.2
MELO3C024033.2 Cucumis melo HOM05D007631 ORTHO05D009566 3.7e-73 278.9 268 55.6
CiPaw.09G164100 Carya illinoinensis HOM05D007631 ORTHO05D009566 2.4e-72 276.2 234 63.2
FAN12G2650 Fragaria x ananassa HOM05D007631 ORTHO05D009566 3.1e-72 275.8 246 61.4
ClCG10G011860 Citrullus lanatus HOM05D007631 ORTHO05D009566 5.3e-72 275.0 189 68.8
Gohir.A03G110300 Gossypium hirsutum HOM05D007631 ORTHO05D009566 2.0e-71 273.1 248 59.3
Duzib268G1119 Durio zibethinus HOM05D007631 ORTHO05D009566 3.4e-71 272.3 242 60.3
Ciclev10032529m.g Citrus clementina HOM05D007631 ORTHO05D009566 7.6e-71 271.2 248 57.7
Nn4g24939 Nelumbo nucifera HOM05D007631 ORTHO05D009566 2.2e-70 269.6 223 62.3
Gohir.D02G134900 Gossypium hirsutum HOM05D007631 ORTHO05D009566 6.5e-70 268.1 249 59.0
AUR62015208 Chenopodium quinoa HOM05D007631 ORTHO05D009566 1.1e-69 267.3 235 56.2
FAN07G2143 Fragaria x ananassa HOM05D007631 ORTHO05D009566 4.2e-69 265.4 255 58.8
Glyma.11G102300 Glycine max HOM05D007631 ORTHO05D009566 4.2e-69 265.4 249 56.6
Cc11_g05090 Coffea canephora HOM05D007631 ORTHO05D009566 5.5e-69 265.0 200 63.0
CAN.G157.15 Capsicum annuum HOM05D007631 ORTHO05D009566 2.1e-68 263.1 199 64.3
PGR119G1778 Punica granatum HOM05D007631 ORTHO05D009566 2.1e-68 263.1 210 61.4
Hma1.2p1_0499F.1_g166830 Hydrangea macrophylla HOM05D007631 ORTHO05D009566 6.1e-68 261.5 246 56.1
MD16G1250700 Malus domestica HOM05D007631 ORTHO05D009566 2.3e-67 259.6 233 59.7
EL10Ac9g22926 Beta vulgaris HOM05D007631 ORTHO05D009566 5.1e-67 258.5 233 55.4
SalBow6G3201 Salvia bowleyana HOM05D007631 ORTHO05D009566 8.7e-67 257.7 197 64.5
Dinv17601 Davidia involucrata HOM05D007631 ORTHO05D009566 1.9e-66 256.5 233 55.8
Lj3g0001232 Lotus japonicus HOM05D007631 ORTHO05D009566 1.3e-65 253.8 250 58.8
PSO478G5292 Papaver somniferum HOM05D007631 ORTHO05D009566 1.6e-65 253.4 197 63.5
Solyc02g055440.4 Solanum lycopersicum HOM05D007631 ORTHO05D009566 1.1e-64 250.8 203 62.1
CANSAT64G0359 Cannabis sativa HOM05D007631 ORTHO05D009566 1.8e-64 250.0 208 62.0
ECA246G0740 Erigeron canadensis HOM05D007631 ORTHO05D009566 6.9e-64 248.1 218 59.2
Sopen02g009160 Solanum pennellii HOM05D007631 ORTHO05D009566 9.0e-64 247.7 203 61.6
GSVIVG01010153001 Vitis vinifera HOM05D007631 ORTHO05D009566 1.5e-63 246.9 235 55.3
VMungo1127G1566 Vigna mungo HOM05D007631 ORTHO05D009566 2.6e-63 246.1 252 54.0
PGSC0003DMG400029978 Solanum tuberosum HOM05D007631 ORTHO05D009566 4.5e-63 245.4 202 63.4
Lsat_1_v5_gn_3_33601 Lactuca sativa HOM05D007631 ORTHO05D009566 2.9e-62 242.7 231 55.4
Lalb_Chr03g0024841 Lupinus albus HOM05D007631 ORTHO05D009566 2.9e-62 242.7 248 52.8
Nitab4.5_0002392g0040 Nicotiana tabacum HOM05D007631 ORTHO05D009566 3.2e-61 239.2 238 54.2
Medtr4g074590 Medicago truncatula HOM05D007631 ORTHO05D009566 1.2e-60 237.3 249 52.6
Sp3g17810 Schrenkiella parvula HOM05D007631 ORTHO05D009566 2.7e-60 236.1 180 62.2
A01p34940 Brassica napus HOM05D007631 ORTHO05D009566 3.6e-60 235.7 182 62.6
C01p44350 Brassica napus HOM05D007631 ORTHO05D009566 3.6e-60 235.7 183 62.3
BolC1t04400H Brassica oleracea HOM05D007631 ORTHO05D009566 3.6e-60 235.7 183 62.3
BraA01t03577Z Brassica rapa HOM05D007631 ORTHO05D009566 3.6e-60 235.7 182 62.6
AT3G19800 Arabidopsis thaliana HOM05D007631 ORTHO05D009566 1.0e-59 234.2 181 61.3
Carub.0003s1968 Capsella rubella HOM05D007631 ORTHO05D009566 1.4e-59 233.8 181 61.9
Thhalv10021444m.g Eutrema salsugineum HOM05D007631 ORTHO05D009566 1.4e-59 233.8 179 61.5
FAN17G2236 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.4e-59 233.8 209 60.8
PSO017G5087 Papaver somniferum HOM05D007631 ORTHO05D009566 1.8e-59 233.4 179 62.6
COL.COLO4_27670 Corchorus olitorius HOM05D007631 ORTHO05D009566 3.9e-59 232.3 241 54.4
AL3G33250 Arabidopsis lyrata HOM05D007631 ORTHO05D009566 8.8e-59 231.1 219 53.4
Aa31LG8G6570 Aethionema arabicum HOM05D007631 ORTHO05D009566 7.4e-58 228.0 182 62.6
TPR.G32328 Trifolium pratense HOM05D007631 ORTHO05D009566 1.7e-57 226.9 258 50.8
HanXRQChr17g0540801 Helianthus annuus HOM05D007631 ORTHO05D009566 6.3e-57 224.9 191 58.1
CARHR095310 Cardamine hirsuta HOM05D007631 ORTHO05D009566 1.8e-56 223.4 180 61.7
Ca_03026_v3 Cicer arietinum L. HOM05D007631 ORTHO05D009566 2.0e-55 219.9 208 56.7
arahy.Tifrunner.gnm1.ann1.C4PR70 Arachis hypogaea HOM05D007631 ORTHO05D009566 1.3e-54 217.2 271 49.8
Sed0008358 Sechium edule HOM05D007631 ORTHO05D009566 1.7e-54 216.9 237 51.1
Hund24286 Selenicereus undatus HOM05D007631 ORTHO05D009566 1.9e-53 213.4 181 58.0
unitig_699.g19551 Utricularia gibba HOM05D007631 ORTHO05D009566 6.1e-52 208.4 194 54.1
HPP92_025628 Vanilla planifolia HOM05D007631 ORTHO05D009566 1.8e-51 206.8 181 55.8
RcHm_v2.0_Chr4g0399891 Rosa chinensis HOM05D007631 ORTHO05D009566 3.9e-51 205.7 172 63.4
FvH4_4g07430 Fragaria vesca HOM05D007631 ORTHO05D009566 5.1e-51 205.3 174 62.6
Phvul.011G031300 Phaseolus vulgaris HOM05D007631 ORTHO05D009566 5.1e-51 205.3 207 52.7
DCAR_030399 Daucus carota HOM05D007631 ORTHO05D009566 6.7e-51 204.9 242 48.8
Prupe.1G077300 Prunus persica HOM05D007631 ORTHO05D009566 3.7e-49 199.1 170 64.7
Haze_20362 Corylus avellana HOM05D007631 ORTHO05D009566 8.2e-49 198.0 257 45.9
Oeu033537.1 Olea europaea HOM05D007631 ORTHO05D009566 1.3e-46 190.7 149 59.1
Sc10g0006760 Simmondsia chinensis HOM05D007631 ORTHO05D009566 7.2e-45 184.9 182 51.1
vmacro10901 Vaccinium macrocarpon HOM05D007631 ORTHO05D009566 1.2e-44 184.1 250 41.2
Psat7g173560 Pisum sativum HOM05D007631 ORTHO05D009566 6.1e-44 181.8 230 46.1
Zm00001eb076870 Zea mays HOM05D007631 ORTHO05D009566 6.7e-43 178.3 176 50.0
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 1.1e-42 177.6 116 69.8
Os04g0525000 Oryza sativa ssp. japonica HOM05D007631 ORTHO05D009566 1.1e-42 177.6 173 52.0
Thecc.02G311600 Theobroma cacao HOM05D007631 ORTHO05D009566 2.6e-42 176.4 177 55.4
Gorai.005G150800 Gossypium raimondii HOM05D007631 ORTHO05D009566 4.4e-42 175.6 181 53.6
QL03p043760 Quercus lobata HOM05D007631 ORTHO05D009566 5.3e-40 168.7 111 70.3
ATR0618G124 Amborella trichopoda HOM05D007631 ORTHO05D009566 2.7e-39 166.4 131 61.8
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 7.7e-39 164.9 202 45.0
SGA_v2.0_scaffold88G27232 Striga asiatica HOM05D007631 ORTHO05D009566 1.0e-38 164.5 128 58.6
FAN22G0357 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.3e-38 164.1 142 62.0
MBI06_g36505_MAGBIO Magnolia biondii HOM05D007631 ORTHO05D009566 1.3e-38 164.1 145 57.2
Atru.chr11.1322 Acer truncatum HOM05D007631 ORTHO05D009566 1.5e-34 150.6 173 49.1
Peaxi162Scf00363g00724 Petunia axillaris HOM05D007631 ORTHO05D009566 7.7e-31 138.3 96 71.9
TAR622G1133 Trochodendron aralioides HOM05D007631 ORTHO05D009566 1.7e-30 137.1 135 50.4
Aqoxy7G02010 Aquilegia oxysepala HOM05D007631 ORTHO05D009566 5.0e-30 135.6 144 51.4
Migut.E00614 Erythranthe guttata HOM05D007631 ORTHO05D009566 2.7e-28 129.8 104 60.6
Migut.E00703 Erythranthe guttata HOM05D007631 ORTHO05D009566 4.7e-28 129.0 122 54.9
Atru.BG.289.p Acer truncatum HOM05D007631 ORTHO05D009566 1.4e-27 127.5 97 64.9
Pp3c1_30620 Physcomitrium patens HOM05D007631 ORTHO05D009566 2.4e-24 116.7 204 33.3
Nitab4.5_0000139g0130 Nicotiana tabacum HOM05D007631 ORTHO05D009566 1.9e-21 107.1 234 32.5
AagrBONN_evm.TU.Sc2ySwM_228.2165 Anthoceros agrestis HOM05D007631 ORTHO05D009566 4.7e-20 102.4 198 34.3
Cfa019889 Carpinus fangiana HOM05D007631 ORTHO05D009566 1.4e-19 100.9 74 62.2
arahy.Tifrunner.gnm1.ann1.GZ47R7 Arachis hypogaea HOM05D007631 ORTHO05D009566 7.3e-13 78.6 119 47.1
CSS0013150 Camellia sinensis var. sinensis HOM05D007631 ORTHO05D009566 1.2e-12 77.8 57 71.9
SGA_v2.0_scaffold88G27234 Striga asiatica HOM05D007631 ORTHO05D009566 8.9e-11 71.6 71 47.9


User provided reference genes

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