Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.8e-216 755.0 373 100.0
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.1e-151 538.9 382 70.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.8e-144 515.8 343 73.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.4e-143 513.5 333 72.7
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 7.0e-143 511.1 328 74.1
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 3.5e-142 508.8 398 65.6
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 7.7e-142 507.7 330 72.7
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 3.8e-141 505.4 396 63.4
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.0e-141 505.0 318 74.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 5.0e-141 505.0 328 73.5
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 6.5e-141 504.6 342 70.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.2e-140 502.3 331 71.9
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.2e-140 502.3 331 71.9
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.4e-140 500.7 383 65.8
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-139 500.0 362 67.1
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.7e-139 499.2 331 71.9
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.6e-139 498.8 328 72.0
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 8.0e-139 497.7 331 71.9
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.4e-138 496.9 362 68.5
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.0e-138 495.4 314 73.6
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 8.8e-138 494.2 322 72.0
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-137 493.4 361 67.3
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.0e-137 493.0 329 71.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.6e-137 492.7 331 70.1
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 5.7e-137 491.5 384 64.1
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 5.7e-137 491.5 329 70.8
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 7.5e-137 491.1 310 74.8
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 9.7e-137 490.7 319 74.3
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.3e-136 490.3 308 74.0
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.2e-136 489.6 341 69.8
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 2.2e-136 489.6 294 76.9
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 4.8e-136 488.4 331 71.0
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 4.8e-136 488.4 326 72.1
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.1e-135 487.3 335 68.7
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.4e-135 486.9 337 70.3
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.4e-135 486.9 336 69.3
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.8e-135 486.5 294 76.5
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 4.1e-135 485.3 300 74.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 4.1e-135 485.3 355 68.2
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 5.3e-135 485.0 299 76.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 7.0e-135 484.6 353 67.7
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 9.1e-135 484.2 328 68.9
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 2.7e-134 482.6 321 71.3
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 4.5e-134 481.9 305 74.1
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.9e-134 481.5 295 76.3
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 5.9e-134 481.5 294 75.9
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 7.7e-134 481.1 389 61.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.7e-133 479.9 317 71.9
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 7.2e-132 474.6 311 71.7
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.4e-130 470.3 322 69.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.0e-130 468.8 334 68.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 8.8e-130 467.6 345 65.2
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.8e-128 462.6 277 76.9
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 8.3e-128 461.1 305 72.1
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.1e-127 460.7 322 68.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.4e-127 460.3 306 71.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.8e-127 459.9 293 74.7
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 2.4e-127 459.5 297 73.1
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.1e-127 459.1 305 72.1
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 3.1e-127 459.1 319 69.0
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 5.4e-127 458.4 321 69.5
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.2e-126 457.2 307 68.7
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-126 456.4 398 59.0
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.7e-126 456.1 308 71.1
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 5.9e-126 454.9 321 68.2
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 5.9e-126 454.9 321 68.2
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-124 450.3 360 62.5
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.5e-124 450.3 295 73.2
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 3.2e-124 449.1 372 61.6
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 3.2e-124 449.1 372 61.6
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 7.2e-124 448.0 313 69.0
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.1e-123 446.4 295 71.2
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.6e-123 445.7 381 60.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.1e-123 444.9 295 70.8
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 8.0e-123 444.5 337 65.0
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.4e-122 443.7 360 61.4
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.8e-122 443.4 369 61.8
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 2.3e-122 443.0 357 59.7
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.0e-122 442.6 328 66.5
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 7.5e-121 438.0 297 69.7
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.8e-121 437.6 310 66.1
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.9e-120 435.3 388 58.5
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.4e-119 431.8 328 64.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.3e-117 427.2 299 68.2
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.7e-117 426.8 257 77.4
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 5.0e-117 425.2 294 65.6
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 6.6e-117 424.9 363 60.1
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 8.6e-117 424.5 366 59.3
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 8.6e-117 424.5 295 68.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.8e-115 419.5 279 71.3
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.4e-114 417.2 293 63.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 4.0e-114 415.6 343 61.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 4.0e-114 415.6 293 66.6
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.0e-114 415.6 338 61.8
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.7e-112 410.2 297 67.3
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 6.4e-112 408.3 292 65.8
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.6e-110 403.7 373 57.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.5e-110 402.5 351 57.3
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.6e-110 402.1 293 63.8
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.0e-109 401.0 347 59.9
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.3e-109 400.6 301 65.4
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.3e-109 399.8 334 60.2
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.9e-109 399.1 253 73.5
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.9e-109 399.1 253 73.5
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.9e-109 399.1 253 73.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.5e-108 397.1 262 73.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-108 397.1 295 63.7
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 8.0e-107 391.3 242 74.8
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.8e-106 390.2 245 74.3
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.1e-106 389.4 293 62.8
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.5e-105 384.8 331 59.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.1e-103 380.9 305 62.0
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 9.5e-100 367.9 287 65.2
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.3e-98 363.2 236 72.5
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 4.0e-98 362.5 350 55.4
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.2e-97 360.9 241 71.4
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.0e-97 360.1 215 78.6
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.9e-95 353.6 282 59.6
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 2.1e-94 350.1 215 76.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.6e-94 349.0 260 66.5
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.7e-93 347.1 260 65.0
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.3e-92 342.4 332 54.2
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 1.2e-89 334.3 305 53.4
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 4.4e-89 332.4 215 74.4
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.7e-88 330.5 390 50.0
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 3.9e-85 319.3 286 55.6
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.1e-83 313.5 300 52.0
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.8e-82 310.5 204 71.6
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 9.6e-76 288.1 173 78.0
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 9.0e-74 281.6 291 52.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.2e-73 281.2 159 78.6
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 5.8e-73 278.9 212 65.1
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 2.9e-72 276.6 244 59.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.4e-71 274.2 155 78.7
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 6.0e-70 268.9 311 49.2
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.1e-68 264.6 310 49.0
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.5e-68 264.2 180 71.7
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 2.8e-67 260.0 174 70.7
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.0e-66 256.1 292 48.6
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.0e-66 256.1 176 68.2
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 2.4e-63 246.9 284 42.3
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 4.6e-62 242.7 200 59.5
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.0e-61 241.5 283 46.3
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.5e-60 237.7 154 69.5
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 3.3e-60 236.5 194 61.9
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 2.1e-59 233.8 281 44.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.6e-57 226.9 239 49.4
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.9e-56 222.6 148 69.6
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.4e-55 221.1 137 73.7
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 6.3e-51 205.7 174 60.3
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 6.5e-48 195.7 140 65.7
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.4e-47 194.5 185 56.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.9e-47 194.1 160 60.6
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 3.2e-47 193.4 147 61.9
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.1e-46 190.7 167 58.1
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.4e-45 188.0 199 52.8
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.3e-45 187.2 276 40.6
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 5.3e-42 176.0 195 52.8
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-40 171.0 144 54.9
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 3.9e-37 159.8 127 62.2
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 2.2e-35 154.1 119 59.7
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.2e-31 140.2 148 52.0
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.4e-29 134.8 72 88.9
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.8e-29 134.4 81 74.1
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 5.7e-28 129.4 125 51.2
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 9.1e-26 122.1 136 44.9
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 1.8e-21 107.8 102 53.9
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 3.3e-20 103.6 95 56.8
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.3e-19 99.4 70 67.1
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.3e-16 91.7 60 71.7
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.7e-16 91.3 52 71.2
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-15 88.2 113 46.0
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 3.0e-13 80.5 65 56.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.0e-13 80.5 153 37.9
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 4.0e-13 80.1 56 67.9
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.2e-12 78.6 45 80.0
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 4.4e-12 76.6 85 48.2
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.1e-10 70.1 60 55.0
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 5.4e-10 69.7 88 38.6
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-09 67.8 52 65.4
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.5e-09 67.0 59 54.2
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 3.8e-08 63.5 43 72.1
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 3.3e-07 60.5 263 26.6
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.2e-06 58.5 263 25.9
DCAR_027769 Daucus carota HOM05D003744 ORTHO05D004327 2.8e-06 57.4 39 74.4
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 4.7e-06 56.6 167 27.5
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 4.7e-06 56.6 172 28.5


User provided reference genes

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