Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.2e-233 812.8 403 100.0
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 4.1e-181 638.3 331 94.6
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 2.3e-176 622.5 404 74.0
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.5e-175 619.8 403 74.7
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 2.0e-175 619.4 403 74.7
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.7e-174 616.3 404 71.8
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.7e-174 616.3 403 75.9
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 2.2e-174 615.9 403 74.2
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 3.7e-174 615.1 405 72.8
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.8e-173 612.8 403 74.2
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.8e-173 612.8 405 72.6
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.5e-172 608.6 403 72.0
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 5.0e-171 604.7 404 71.5
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 6.5e-171 604.4 405 72.6
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 6.5e-171 604.4 404 74.0
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 2.5e-170 602.4 405 71.4
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 5.5e-170 601.3 405 71.4
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.2e-169 600.1 403 71.5
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.6e-169 599.7 405 70.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 3.6e-169 598.6 404 73.5
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.0e-169 597.4 405 70.1
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.8e-168 596.3 404 71.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 3.0e-168 595.5 403 72.7
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.0e-168 595.1 405 71.1
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.5e-167 593.2 409 72.4
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 3.4e-167 592.0 405 69.9
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.2e-164 583.6 405 71.1
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.5e-164 582.0 403 70.5
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.7e-163 579.7 403 70.0
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 6.5e-163 577.8 404 69.6
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.1e-162 577.0 397 68.3
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-162 575.9 406 69.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.2e-161 573.5 405 67.9
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 2.8e-161 572.4 404 68.1
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 6.1e-161 571.2 403 69.0
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.4e-160 570.1 405 69.1
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 3.0e-160 568.9 408 68.1
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 5.2e-160 568.2 408 69.9
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 8.8e-160 567.4 407 68.6
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.2e-159 567.0 398 69.8
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.5e-159 566.6 405 67.9
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 3.4e-159 565.5 408 68.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.3e-158 563.5 405 66.9
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.7e-158 563.1 406 66.7
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.2e-158 562.8 406 68.2
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 2.2e-158 562.8 404 67.6
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.8e-158 562.4 419 66.8
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.8e-158 562.4 406 68.0
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.7e-158 562.0 406 67.2
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 3.1e-157 558.9 411 69.3
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.1e-157 558.5 407 65.8
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 7.0e-157 557.8 406 67.7
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 4.5e-156 555.1 425 65.6
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 5.9e-156 554.7 399 69.2
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 7.7e-156 554.3 406 66.7
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.0e-155 553.9 405 66.9
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.3e-155 553.5 406 66.5
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.7e-155 553.1 407 66.3
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 6.6e-155 551.2 406 66.3
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 6.6e-155 551.2 411 66.9
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.9e-154 549.7 404 66.6
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.3e-154 548.5 449 62.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 7.3e-154 547.7 405 68.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 2.1e-153 546.2 406 65.3
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 2.8e-153 545.8 406 64.8
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.8e-153 545.8 406 65.3
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 2.8e-153 545.8 407 66.6
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 3.6e-153 545.4 411 65.9
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 6.1e-153 544.7 417 64.5
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.0e-152 543.9 414 65.7
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.4e-152 543.5 404 65.8
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.3e-152 542.7 407 65.4
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 2.3e-152 542.7 407 65.4
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 8.9e-152 540.8 484 60.5
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 8.9e-152 540.8 408 66.4
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-151 540.4 406 64.3
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.2e-150 536.2 362 69.9
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 8.3e-150 534.3 384 70.8
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.4e-149 533.5 407 65.6
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 9.2e-149 530.8 400 64.8
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.2e-148 530.4 404 63.4
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.2e-148 530.4 450 60.7
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.0e-148 529.6 404 64.4
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.7e-147 526.6 412 62.9
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 6.6e-147 524.6 405 64.0
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 6.6e-147 524.6 428 63.1
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.9e-146 523.1 393 64.6
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.3e-146 521.2 400 64.0
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.1e-144 515.8 398 64.3
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.9e-142 509.2 397 64.5
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 4.9e-142 508.4 344 72.1
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.9e-141 506.5 398 63.6
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.2e-141 504.2 389 64.0
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.2e-140 503.8 404 62.1
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 5.0e-139 498.4 366 66.7
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.2e-137 493.8 407 61.9
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 4.7e-137 491.9 414 59.4
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 4.7e-137 491.9 435 59.1
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 4.7e-137 491.9 435 59.1
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.4e-135 485.3 399 60.9
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.8e-135 485.0 395 61.0
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.2e-134 483.0 381 62.5
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 6.4e-134 481.5 398 60.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 9.2e-133 477.6 405 59.5
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 2.7e-132 476.1 398 60.6
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 4.6e-132 475.3 401 59.6
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 3.0e-131 472.6 400 61.0
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.5e-130 469.5 390 61.3
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-127 459.9 397 59.4
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 7.6e-127 458.0 397 59.4
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 9.9e-127 457.6 364 61.5
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.4e-126 454.9 398 59.8
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.5e-124 449.1 402 57.7
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.5e-122 443.7 317 65.3
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.9e-122 443.4 387 59.4
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 2.1e-121 439.9 360 61.1
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.8e-121 439.5 401 58.6
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.2e-119 434.1 402 56.5
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.4e-119 432.6 402 56.7
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.2e-117 426.0 404 56.7
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-115 420.6 403 54.6
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.3e-115 419.9 403 54.6
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 4.3e-114 415.6 328 61.9
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 6.2e-113 411.8 252 75.8
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 3.1e-112 409.5 403 53.8
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 2.2e-110 403.3 398 53.5
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.4e-109 399.8 383 54.8
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.4e-109 399.8 383 54.8
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 5.4e-109 398.7 383 54.6
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 9.3e-109 397.9 321 61.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.3e-107 394.0 272 66.9
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 7.4e-106 388.3 406 53.2
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 9.0e-104 381.3 359 57.7
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.4e-101 373.2 381 52.8
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.5e-100 369.4 340 57.6
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-98 363.2 262 67.6
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.4e-96 357.5 260 68.8
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 4.9e-94 349.0 340 55.6
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-93 346.7 272 62.9
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 4.2e-93 345.9 394 47.7
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.3e-91 340.9 229 71.6
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.9e-91 339.3 256 64.1
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 4.3e-90 335.9 406 46.1
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 3.7e-89 332.8 400 46.0
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.4e-88 330.1 252 62.7
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.5e-85 320.1 264 60.6
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.0e-83 314.7 408 42.6
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 2.5e-82 310.1 363 49.3
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.5e-74 284.3 300 53.0
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.0e-67 260.0 193 64.8
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.4e-66 256.1 156 71.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 5.7e-58 229.2 451 34.8
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 9.1e-48 195.3 366 36.6
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.4e-40 171.4 140 63.6
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.6e-39 167.9 134 64.2
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.0e-39 167.5 134 63.4
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.7e-39 167.2 333 32.7
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.7e-38 164.5 131 65.6
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.6e-36 156.8 111 64.9
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.2e-31 141.7 331 29.0
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 7.8e-31 139.0 302 34.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 3.0e-30 137.1 384 29.2
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-29 135.2 303 34.0
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 4.1e-24 116.7 128 48.4
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.1e-21 108.6 123 51.2
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.6e-20 104.8 67 74.6
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-17 95.1 64 68.8
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 7.1e-16 89.4 99 51.5
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 6.6e-14 82.8 68 57.4
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 1.2e-10 72.0 133 37.6
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.4e-10 70.1 61 62.3
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 2.9e-09 67.4 37 83.8
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 3.2e-08 63.9 44 75.0


User provided reference genes

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