Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 6.6e-147 524.6 407 100.0
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 1.1e-128 464.2 400 91.5
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 2.1e-116 423.3 466 70.2
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.7e-113 413.7 403 81.9
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 2.3e-107 393.3 404 78.5
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 3.0e-107 392.9 404 78.5
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 1.7e-105 387.1 404 80.2
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.1e-104 384.4 402 79.4
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.1e-104 384.4 402 79.4
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 1.1e-104 384.4 405 77.8
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 1.2e-103 380.9 404 78.5
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 1.3e-102 377.5 402 79.6
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 3.8e-102 375.9 405 75.8
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 5.0e-102 375.6 404 81.7
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 8.5e-102 374.8 399 78.9
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 1.1e-101 374.4 403 78.9
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.4e-101 374.0 404 77.7
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 7.2e-101 371.7 401 77.1
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.6e-100 370.5 405 76.8
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 2.1e-100 370.2 405 76.8
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 6.1e-100 368.6 404 77.2
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 6.1e-100 368.6 404 74.8
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 8.0e-100 368.2 404 77.2
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 1.1e-98 364.4 404 75.7
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 2.6e-98 363.2 402 72.6
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 3.3e-98 362.8 405 75.8
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 9.7e-98 361.3 405 78.3
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 9.7e-98 361.3 405 78.3
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 2.2e-97 360.1 401 75.3
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 4.8e-97 359.0 405 75.8
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 4.8e-97 359.0 404 76.2
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 7.0e-96 355.1 405 74.8
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 1.6e-95 354.0 405 76.5
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 1.6e-95 354.0 404 75.5
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 2.0e-95 353.6 405 74.8
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 4.5e-95 352.4 405 75.3
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 4.5e-95 352.4 404 76.7
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 7.7e-95 351.7 392 77.3
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 1.7e-94 350.5 405 74.8
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.7e-94 350.5 402 74.4
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 1.5e-93 347.4 402 77.6
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.9e-93 347.1 405 74.3
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 3.2e-93 346.3 403 77.2
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 4.2e-93 345.9 405 74.3
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 5.5e-93 345.5 412 71.6
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.2e-92 344.4 402 77.4
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 3.6e-92 342.8 404 73.8
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 8.0e-92 341.7 399 75.2
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 8.0e-92 341.7 405 72.3
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 2.3e-91 340.1 402 73.4
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.2e-90 337.8 405 74.1
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 5.7e-90 335.5 401 73.3
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 5.7e-90 335.5 405 75.6
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 1.3e-89 334.3 405 75.1
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 6.3e-89 332.0 403 73.2
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 1.1e-88 331.3 403 72.7
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 1.4e-88 330.9 403 73.9
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 1.4e-88 330.9 399 74.9
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 2.4e-88 330.1 405 73.3
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 3.1e-88 329.7 402 72.9
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 7.0e-88 328.6 400 73.8
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 2.7e-87 326.6 405 71.6
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 4.5e-87 325.9 405 72.6
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 5.9e-87 325.5 405 72.6
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 1.0e-86 324.7 404 73.3
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 1.7e-86 323.9 405 72.6
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 2.2e-86 323.6 405 73.6
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 2.2e-86 323.6 405 71.9
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.8e-86 322.8 405 72.6
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 1.9e-85 320.5 401 71.8
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 2.5e-85 320.1 401 71.8
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 1.2e-84 317.8 397 71.8
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 1.0e-83 314.7 405 73.1
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 2.6e-82 310.1 400 71.5
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 7.5e-82 308.5 400 71.2
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.7e-81 307.4 405 69.4
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 3.1e-80 303.1 401 71.3
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 4.1e-80 302.8 405 63.7
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 5.5e-77 292.4 401 71.8
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 7.2e-77 292.0 432 53.2
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 1.6e-76 290.8 534 51.5
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 2.8e-76 290.0 398 64.1
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 9.8e-74 281.6 416 60.8
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 9.8e-74 281.6 402 68.2
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 1.8e-72 277.3 405 67.2
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 9.2e-72 275.0 402 70.6
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 5.0e-70 269.2 407 64.9
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.1e-68 263.8 403 70.0
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.4e-67 261.2 415 61.0
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 1.5e-66 257.7 397 67.0
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 3.5e-63 246.5 397 69.0
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 8.6e-62 241.9 400 68.0
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 1.9e-61 240.7 404 68.3
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 5.8e-58 229.2 402 64.9
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 1.0e-54 218.4 401 64.8
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 4.0e-51 206.5 181 60.8
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 5.8e-50 202.6 183 60.1
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 1.1e-48 198.4 393 63.9
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 9.2e-48 195.3 401 63.8
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 7.8e-47 192.2 392 49.5
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 2.8e-44 183.7 402 62.4
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 3.6e-44 183.3 183 50.3
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 3.1e-43 180.3 180 47.2
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 3.2e-40 170.2 399 57.4
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 7.8e-39 165.6 154 59.1
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.0e-38 165.2 108 72.2
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 1.0e-38 165.2 108 72.2
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.3e-36 158.3 398 58.8
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 1.5e-34 151.4 102 74.5
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 2.6e-34 150.6 109 67.0
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 2.3e-30 137.5 92 73.9
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 2.5e-29 134.0 106 63.2
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 4.9e-17 93.2 70 61.4
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 5.8e-10 69.7 70 48.6
BcaNung04741 Brassica carinata HOM05D002125 ORTHO05D002105 2.5e-08 64.3 152 30.9
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 3.2e-08 63.9 64 46.9
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 3.2e-08 63.9 70 44.3
Cfa006657 Carpinus fangiana HOM05D002125 ORTHO05D002105 5.5e-08 63.2 149 25.5
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 7.1e-08 62.8 143 31.5
Sc21g0004980 Simmondsia chinensis HOM05D002125 ORTHO05D002105 1.6e-07 61.6 142 31.0
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.1e-07 61.2 139 33.1
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 2.7e-07 60.8 59 52.5
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 4.6e-07 60.1 184 28.3
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 7.9e-07 59.3 140 30.0
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 1.0e-06 58.9 155 27.7
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 2.3e-06 57.8 140 30.0
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 3.9e-06 57.0 155 26.5
Sed0004605 Sechium edule HOM05D001818 ORTHO05D001780 3.9e-06 57.0 146 25.3
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 5.1e-06 56.6 150 28.0
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 5.1e-06 56.6 150 28.0
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 5.1e-06 56.6 143 30.1
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 6.7e-06 56.2 70 41.4
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 6.7e-06 56.2 150 28.0
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 8.7e-06 55.8 146 27.4
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 8.7e-06 55.8 185 25.9


User provided reference genes

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