Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G087000 Populus trichocarpa HOM05D008370 ORTHO05D009732 1.8e-37 158.7 77 100.0
Sabra05G0071700 Salix brachista HOM05D008370 ORTHO05D009732 5.6e-31 137.1 77 88.3
Potri.007G077300 Populus trichocarpa HOM05D008370 ORTHO05D009732 9.6e-31 136.3 77 85.7
Sabra07G0065300 Salix brachista HOM05D008370 ORTHO05D009732 1.1e-26 122.9 77 81.8
Dinv05773 Davidia involucrata HOM05D008370 ORTHO05D009732 2.6e-12 75.1 77 55.8
Thecc.07G145600 Theobroma cacao HOM05D008370 ORTHO05D009732 7.7e-12 73.6 77 50.6
Lj1g0003311 Lotus japonicus HOM05D008370 ORTHO05D009732 2.9e-11 71.6 82 50.0
Rhsim08G0004800 Rhododendron simsii HOM05D008370 ORTHO05D009732 3.8e-11 71.2 82 50.0
CSS0039971 Camellia sinensis var. sinensis HOM05D008370 ORTHO05D009732 8.5e-11 70.1 77 50.6
Manes.12G145500 Manihot esculenta HOM05D008370 ORTHO05D009732 8.5e-11 70.1 82 56.1
Gohir.A02G136703 Gossypium hirsutum HOM05D008370 ORTHO05D009732 1.1e-10 69.7 81 49.4
COL.COLO4_22370 Corchorus olitorius HOM05D008370 ORTHO05D009732 2.5e-10 68.6 82 50.0
Manes.13G080360 Manihot esculenta HOM05D008370 ORTHO05D009732 2.5e-10 68.6 80 56.2
TPR.G2215 Trifolium pratense HOM05D010746 ORTHO05D009732 2.5e-10 68.6 84 52.4
arahy.Tifrunner.gnm1.ann1.3XNV5U Arachis hypogaea HOM05D008370 ORTHO05D009732 1.6e-09 65.9 78 50.0
Glyma.05G186300 Glycine max HOM05D008370 ORTHO05D009732 2.1e-09 65.5 78 47.4
CiPaw.04G088900 Carya illinoinensis HOM05D008370 ORTHO05D009732 2.7e-09 65.1 72 55.6
Gorai.003G048600 Gossypium raimondii HOM05D008370 ORTHO05D009732 2.7e-09 65.1 79 49.4
Actinidia01380 Actinidia chinensis HOM05D008370 ORTHO05D009732 3.6e-09 64.7 80 47.5
TPR.G2226 Trifolium pratense HOM05D008370 ORTHO05D009732 3.6e-09 64.7 80 50.0
Cfa002787 Carpinus fangiana HOM05D008370 ORTHO05D009732 1.0e-08 63.2 77 48.1
Glyma.04G217800 Glycine max HOM05D008370 ORTHO05D009732 1.0e-08 63.2 80 47.5
Oeu028352.1 Olea europaea HOM05D008370 ORTHO05D009732 1.4e-08 62.8 77 45.5
Thecc.01G117100 Theobroma cacao HOM05D008370 ORTHO05D009732 1.4e-08 62.8 79 45.6
arahy.Tifrunner.gnm1.ann1.Z046N5 Arachis hypogaea HOM05D010746 ORTHO05D009732 1.8e-08 62.4 87 44.8
Glyma.08G144800 Glycine max HOM05D008370 ORTHO05D009732 1.8e-08 62.4 70 48.6
Lj4g0015780 Lotus japonicus HOM05D008370 ORTHO05D009732 1.8e-08 62.4 79 46.8
Medtr8g092340 Medicago truncatula HOM05D010746 ORTHO05D009732 2.3e-08 62.0 82 48.8
COL.COLO4_17423 Corchorus olitorius HOM05D008370 ORTHO05D009732 5.1e-08 60.8 77 41.6
Gohir.D03G047500 Gossypium hirsutum HOM05D008370 ORTHO05D009732 5.1e-08 60.8 79 48.1
Prupe.6G166000 Prunus persica HOM05D015647 ORTHO05D009732 6.7e-08 60.5 92 43.5
Oeu001983.1 Olea europaea HOM05D008370 ORTHO05D009732 8.8e-08 60.1 77 42.9
Glyma.05G186400 Glycine max HOM05D010746 ORTHO05D009732 1.1e-07 59.7 85 43.5
Psat7g050120 Pisum sativum HOM05D010746 ORTHO05D009732 1.1e-07 59.7 83 44.6
Phvul.009G138200 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 1.5e-07 59.3 80 43.8
Lj4g0014601 Lotus japonicus HOM05D010746 ORTHO05D009732 2.0e-07 58.9 87 42.5
Lalb_Chr12g0203401 Lupinus albus HOM05D010746 ORTHO05D009732 2.6e-07 58.5 82 43.9
Duzib187G1656 Durio zibethinus HOM05D008370 ORTHO05D009732 3.3e-07 58.2 80 48.8
Phvul.002G267404 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 3.3e-07 58.2 71 49.3
Actinidia12221 Actinidia chinensis HOM05D008370 ORTHO05D009732 4.4e-07 57.8 81 45.7
arahy.Tifrunner.gnm1.ann1.Q4N452 Arachis hypogaea HOM05D010746 ORTHO05D009732 4.4e-07 57.8 86 41.9
arahy.Tifrunner.gnm1.ann1.R1SWRL Arachis hypogaea HOM05D010746 ORTHO05D009732 4.4e-07 57.8 86 41.9
Glyma.06G148100 Glycine max HOM05D008370 ORTHO05D009732 4.4e-07 57.8 83 45.8
Glyma.06G148200 Glycine max HOM05D010746 ORTHO05D009732 4.4e-07 57.8 85 38.8
Psat5g065200 Pisum sativum HOM05D010746 ORTHO05D009732 4.4e-07 57.8 82 45.1
SalBow5G4820 Salvia bowleyana HOM05D008370 ORTHO05D009732 4.4e-07 57.8 77 46.8
Cfa002786 Carpinus fangiana HOM05D008370 ORTHO05D009732 5.7e-07 57.4 69 47.8
Haze_25084 Corylus avellana HOM05D008370 ORTHO05D009732 5.7e-07 57.4 69 47.8
Glyma.04G217600 Glycine max HOM05D010746 ORTHO05D009732 7.4e-07 57.0 85 40.0
Atru.chr4.716 Acer truncatum HOM05D008370 ORTHO05D009732 9.7e-07 56.6 88 39.8
CiPaw.04G088800 Carya illinoinensis HOM05D008370 ORTHO05D009732 9.7e-07 56.6 73 45.2
Gohir.A01G042000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 9.7e-07 56.6 79 43.0
Medtr3g095180 Medicago truncatula HOM05D010746 ORTHO05D009732 9.7e-07 56.6 86 40.7
Cpa.g.sc72.52 Carica papaya HOM05D008370 ORTHO05D009732 1.3e-06 56.2 73 41.1
Duzib147G0345 Durio zibethinus HOM05D008370 ORTHO05D009732 1.3e-06 56.2 79 41.8
Gorai.002G039200 Gossypium raimondii HOM05D008370 ORTHO05D009732 1.3e-06 56.2 78 42.3
MD01G1015700 Malus domestica HOM05D008370 ORTHO05D009732 1.3e-06 56.2 78 48.7
arahy.Tifrunner.gnm1.ann1.G5B6SC Arachis hypogaea HOM05D008370 ORTHO05D009732 1.7e-06 55.8 81 44.4
CiPaw.03G131600 Carya illinoinensis HOM05D008370 ORTHO05D009732 1.7e-06 55.8 70 50.0
QL06p031379 Quercus lobata HOM05D008370 ORTHO05D009732 1.7e-06 55.8 68 45.6
Cc07_g16670 Coffea canephora HOM05D008370 ORTHO05D009732 2.2e-06 55.5 77 46.8
Psat7g050080 Pisum sativum HOM05D008370 ORTHO05D009732 2.8e-06 55.1 80 47.5
FAN26G2287 Fragaria x ananassa HOM05D015647 ORTHO05D009732 3.7e-06 54.7 81 43.2
RcHm_v2.0_Chr2g0118101 Rosa chinensis HOM05D015647 ORTHO05D009732 3.7e-06 54.7 82 41.5
FAN28G0316 Fragaria x ananassa HOM05D015647 ORTHO05D009732 4.8e-06 54.3 85 42.4
arahy.Tifrunner.gnm1.ann1.U48W6H Arachis hypogaea HOM05D008370 ORTHO05D009732 6.3e-06 53.9 76 43.4
Eucgr.I00294 Eucalyptus grandis HOM05D008370 ORTHO05D009732 6.3e-06 53.9 76 47.4
Phvul.009G138100 Phaseolus vulgaris HOM05D010746 ORTHO05D009732 6.3e-06 53.9 85 38.8
TPR.G227 Trifolium pratense HOM05D010746 ORTHO05D009732 6.3e-06 53.9 81 42.0
FvH4_1g23250 Fragaria vesca HOM05D015647 ORTHO05D009732 8.2e-06 53.5 85 41.2
FAN19G0574 Fragaria x ananassa HOM05D015647 ORTHO05D009732 8.2e-06 53.5 85 41.2


User provided reference genes

Program Settings