Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.0e-200 702.2 352 100.0
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.0e-151 538.1 359 78.6
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 9.5e-150 533.9 359 78.3
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.8e-93 346.3 376 55.1
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 3.2e-81 306.2 369 51.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.0e-74 284.6 375 49.6
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.9e-73 280.4 373 47.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.5e-73 278.9 371 47.2
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.1e-72 276.9 367 48.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 3.6e-72 276.2 378 46.6
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.6e-72 276.2 369 47.4
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.6e-72 275.8 361 48.2
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 2.3e-71 273.5 388 45.6
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 2.0e-70 270.4 366 45.9
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.5e-70 270.0 362 45.9
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.2e-69 266.9 357 48.2
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.8e-66 256.1 324 47.8
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 3.2e-65 253.1 368 43.5
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.2e-64 251.1 357 46.5
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 4.7e-64 249.2 376 45.7
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 6.1e-64 248.8 363 45.7
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.3e-61 241.1 353 44.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.8e-61 240.0 354 43.5
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.8e-61 239.2 357 45.4
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.8e-61 239.2 357 45.4
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.4e-60 237.7 376 43.4
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.4e-60 236.9 358 45.3
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 7.0e-60 235.3 367 43.1
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 9.1e-60 235.0 390 43.6
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 7.7e-59 231.9 369 42.5
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.2e-58 230.3 382 42.7
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.0e-58 229.2 186 63.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.2e-56 224.6 370 42.7
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 6.1e-56 222.2 372 42.7
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 8.0e-56 221.9 355 42.0
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.0e-55 219.5 370 42.2
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 8.8e-55 218.4 383 41.5
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 2.6e-54 216.9 370 41.9
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.4e-54 216.1 355 43.9
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 9.1e-52 208.4 353 41.4
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.7e-51 206.8 287 45.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.5e-51 206.5 391 41.2
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.5e-50 201.8 358 41.3
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.1e-49 201.4 349 40.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.5e-49 201.1 357 39.2
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.1e-48 195.7 327 41.0
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.2e-47 192.6 356 37.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.7e-45 187.6 332 38.9
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.8e-45 186.8 353 39.7
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.3e-45 185.7 362 39.5
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.4e-44 182.6 373 36.7
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.0e-43 180.6 351 36.5
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.7e-43 178.7 346 39.3
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.7e-42 177.6 352 35.8
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-42 177.6 352 35.8
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.7e-42 177.6 352 35.8
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 2.9e-42 176.8 343 40.2
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-41 174.9 352 35.8
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.1e-41 174.9 370 37.0
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 4.2e-41 172.9 356 37.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 5.5e-41 172.6 352 35.8
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.7e-40 170.2 345 36.2
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.4e-39 167.9 379 35.6
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.0e-39 166.8 343 35.6
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 4.0e-39 166.4 225 44.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.0e-39 166.4 274 39.4
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.5e-38 164.5 356 35.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 2.2e-37 160.6 186 47.8
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.8e-37 160.2 346 36.1
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 8.3e-37 158.7 343 35.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.4e-36 157.1 348 34.2
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.4e-36 157.1 365 34.5
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 9.2e-36 155.2 345 35.9
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-35 154.8 352 33.8
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.6e-35 154.5 343 35.0
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.6e-35 154.5 345 36.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.0e-34 151.8 347 36.0
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.7e-34 151.0 353 33.4
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.3e-34 150.6 365 35.1
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.1e-33 148.3 353 33.7
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.5e-33 147.9 349 34.4
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.9e-33 147.5 357 33.9
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.5e-33 147.1 222 41.4
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 3.3e-33 146.7 372 30.6
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-32 144.8 151 51.7
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.2e-32 144.8 151 51.7
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.6e-32 144.4 319 33.2
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.6e-32 144.4 319 33.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.6e-32 144.4 352 31.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.7e-32 142.9 351 35.3
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.0e-31 141.7 352 32.1
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.0e-31 141.7 261 36.8
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.0e-31 141.7 261 36.8
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.3e-31 140.6 336 33.9
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 6.8e-31 139.0 370 33.5
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.2e-30 138.3 368 31.5
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 2.6e-30 137.1 374 33.7
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.4e-30 136.3 355 31.3
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.7e-29 134.4 354 33.6
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.2e-29 134.0 177 45.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 3.7e-29 133.3 357 30.0
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 3.7e-29 133.3 341 32.0
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.9e-29 132.9 288 39.6
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.1e-28 131.7 345 32.2
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.1e-28 129.8 283 31.8
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 4.1e-28 129.8 344 35.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 9.2e-28 128.6 246 35.4
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.6e-27 127.9 187 41.7
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.6e-27 127.9 352 31.2
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.6e-27 127.9 352 31.2
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 3.5e-27 126.7 195 40.5
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.7e-26 124.4 172 40.1
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.3e-26 124.0 352 31.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 6.6e-26 122.5 322 31.1
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.5e-25 120.6 328 31.4
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.5e-25 120.6 343 30.9
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 5.6e-25 119.4 124 49.2
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.6e-24 117.9 419 28.9
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 6.2e-24 115.9 136 45.6
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.4e-23 114.8 364 26.9
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 4.0e-23 113.2 327 33.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 5.8e-22 109.4 330 30.0
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.7e-21 107.8 340 33.2
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 6.4e-21 105.9 144 42.4
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 6.0e-19 99.4 344 28.8
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.3e-18 98.2 186 34.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.1e-17 95.1 349 27.8
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 7.3e-17 92.4 113 42.5
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.3e-15 87.4 112 41.1
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 3.7e-13 80.1 113 41.6
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.9e-12 77.8 344 26.2
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.2e-11 75.1 266 28.6
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 3.5e-11 73.6 88 42.0
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 7.8e-11 72.4 206 33.0
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.3e-10 71.6 264 29.9
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.0e-10 70.5 103 37.9
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 7.3e-09 65.9 76 48.7
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 6.2e-08 62.8 127 34.6
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 8.1e-08 62.4 94 38.3
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.1e-07 62.0 141 29.8
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.3e-07 60.8 101 34.7


User provided reference genes

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