Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.8e-207 724.9 466 100.0
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 9.6e-166 587.4 466 84.3
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 7.8e-160 567.8 466 77.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.1e-145 520.8 467 72.6
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.4e-123 446.0 472 60.4
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 5.5e-121 438.7 470 63.6
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.1e-119 432.2 431 61.5
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.0e-118 430.3 470 60.2
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.4e-116 424.1 456 60.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 6.9e-116 421.8 495 61.0
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.0e-115 420.2 477 59.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 2.6e-115 419.9 489 63.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 6.5e-114 415.2 480 61.7
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 2.5e-113 413.3 498 58.2
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.5e-113 413.3 317 71.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 9.4e-113 411.4 493 57.4
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.6e-112 410.6 315 74.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 3.6e-112 409.5 471 63.5
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.7e-112 409.1 319 71.2
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.9e-111 406.0 461 56.6
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.5e-110 404.1 462 59.7
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.0e-110 403.7 475 61.1
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.8e-109 399.1 303 72.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 6.3e-109 398.7 473 57.9
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 5.3e-108 395.6 470 57.0
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.2e-107 394.4 303 72.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.5e-107 392.9 461 59.0
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-106 391.3 303 72.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 2.2e-106 390.2 236 85.2
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.5e-105 386.7 469 59.9
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.2e-104 384.4 244 80.7
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.1e-104 382.1 491 56.6
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.8e-103 380.6 486 60.3
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 4.0e-103 379.4 244 77.0
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 5.2e-103 379.0 298 69.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 6.7e-103 378.6 244 76.6
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 6.7e-103 378.6 478 52.9
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 6.7e-103 378.6 244 77.0
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.1e-102 377.9 242 80.2
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.6e-102 376.7 244 76.2
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 5.7e-102 375.6 244 75.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 5.7e-102 375.6 247 76.1
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.7e-102 375.6 478 55.2
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.3e-101 374.4 244 75.8
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-101 374.4 450 60.2
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.3e-101 374.4 474 50.2
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.8e-101 373.2 491 59.5
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.8e-101 373.2 244 78.3
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 3.7e-101 372.9 458 58.3
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.3e-101 372.1 491 53.4
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-100 371.3 244 74.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.1e-100 371.3 244 74.2
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 4.1e-100 369.4 321 67.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 9.1e-100 368.2 244 73.4
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 9.1e-100 368.2 244 73.4
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 9.1e-100 368.2 469 55.4
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 9.1e-100 368.2 469 55.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 5.9e-99 365.5 311 67.2
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 7.7e-99 365.2 461 52.3
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.8e-98 362.8 469 54.6
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.8e-98 362.8 480 56.0
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-97 361.3 245 73.1
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-97 361.3 245 73.1
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.1e-97 361.3 245 73.1
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.9e-97 360.5 245 72.7
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.5e-97 360.1 331 60.1
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.2e-97 359.8 245 72.7
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 4.2e-97 359.4 311 63.3
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 7.2e-97 358.6 458 53.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 3.6e-96 356.3 302 64.2
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.1e-96 355.5 491 50.7
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 8.0e-96 355.1 478 52.7
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.0e-95 354.8 475 53.1
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.8e-95 354.0 486 50.2
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.8e-95 354.0 248 73.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.8e-95 354.0 469 55.2
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 3.0e-95 353.2 459 52.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.0e-95 353.2 526 54.6
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 5.2e-95 352.4 283 70.7
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 5.2e-95 352.4 458 57.4
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 8.8e-95 351.7 230 76.1
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.0e-94 350.5 462 51.3
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.4e-94 349.7 238 74.8
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 7.5e-94 348.6 398 59.5
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.7e-93 347.4 302 63.2
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 7.0e-92 342.0 302 60.3
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.2e-91 341.3 483 48.7
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.0e-91 340.5 245 70.2
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 5.9e-91 339.0 243 68.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.2e-90 337.0 244 71.3
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 3.8e-90 336.3 238 71.8
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 6.5e-90 335.5 248 69.0
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.5e-89 333.6 242 71.9
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 7.2e-89 332.0 349 55.0
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.6e-88 330.9 246 68.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.1e-88 330.5 495 48.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 4.7e-88 329.3 320 57.8
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.1e-88 328.9 273 65.6
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.4e-87 327.8 236 70.3
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 6.8e-87 325.5 445 53.7
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 5.7e-86 322.4 311 57.9
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.5e-86 322.0 247 68.0
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 7.5e-86 322.0 483 55.7
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.3e-85 321.2 465 52.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.7e-85 320.9 490 52.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.7e-85 320.9 299 58.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 4.9e-85 319.3 316 61.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.8e-84 317.4 491 51.9
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.6e-83 314.3 475 50.9
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.9e-82 310.1 428 49.8
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.8e-82 309.7 243 65.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.2e-80 304.7 213 74.6
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.8e-80 303.5 402 48.5
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.6e-80 303.1 297 57.2
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 2.7e-75 287.0 479 48.2
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 2.1e-72 277.3 222 60.4
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 7.5e-70 268.9 297 50.5
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 9.8e-70 268.5 288 52.4
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 5.2e-55 219.5 253 46.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 3.6e-48 196.8 252 41.3
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 2.4e-47 194.1 245 44.9
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 3.1e-47 193.7 246 44.3
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.5e-43 180.3 112 81.2
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 5.6e-41 172.9 228 38.6
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.8e-38 162.9 289 39.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 2.9e-37 160.6 245 37.6
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 8.4e-37 159.1 126 62.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.4e-36 157.5 89 80.9
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.4e-36 156.4 233 40.3
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 9.3e-36 155.6 244 38.9
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.0e-30 137.9 227 38.3
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.9e-29 134.0 222 36.0
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.2e-28 130.6 218 32.6
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 5.6e-25 119.8 226 32.7
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.6e-24 118.2 313 46.3
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.4e-23 115.2 215 32.6
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.4e-23 114.4 160 42.5
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.6e-22 110.9 220 35.0
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 3.0e-18 97.4 290 44.5
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.4e-15 87.8 239 32.2
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 2.2e-13 81.3 105 43.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.4e-12 78.6 51 62.7
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.4e-12 78.6 105 45.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 7.2e-12 76.3 201 33.3
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.6e-11 75.1 211 28.4
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.7e-11 74.3 48 56.2
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 4.6e-11 73.6 129 38.0
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.9e-10 70.5 108 40.7
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.1e-09 68.9 55 49.1
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.5e-09 68.6 177 31.1
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 3.3e-09 67.4 137 34.3
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 2.0e-06 58.2 49 51.0


User provided reference genes

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