Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.2e-187 659.8 357 100.0
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 4.3e-174 614.8 357 89.4
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.2e-120 437.2 352 67.0
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.6e-110 402.9 353 64.3
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.7e-109 399.1 357 61.3
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.3e-106 390.6 337 62.6
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.7e-106 390.2 353 62.9
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.9e-106 389.4 353 62.6
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 8.5e-106 387.9 330 63.6
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 8.0e-104 381.3 345 61.4
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 8.8e-103 377.9 334 66.5
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.3e-101 374.0 354 59.3
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.7e-101 373.6 337 60.2
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.7e-101 373.6 341 58.4
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 1.7e-101 373.6 348 59.2
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 8.2e-101 371.3 340 60.3
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 1.1e-100 370.9 337 57.6
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 4.1e-100 369.0 345 59.4
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 2.0e-99 366.7 344 58.1
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 3.5e-99 365.9 342 56.7
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 5.9e-99 365.2 345 57.4
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.0e-98 364.4 341 61.0
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.3e-98 364.0 329 58.4
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.3e-98 364.0 329 58.4
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.7e-98 363.6 332 59.6
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 2.2e-98 363.2 353 56.7
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.2e-98 363.2 342 57.9
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.9e-98 362.8 337 57.9
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 6.5e-98 361.7 373 53.9
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 8.5e-98 361.3 332 58.1
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.9e-97 360.1 332 57.8
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 2.5e-97 359.8 331 57.4
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 4.2e-97 359.0 307 63.8
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.2e-97 359.0 345 57.4
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.2e-97 359.0 345 57.4
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.2e-97 359.0 345 57.4
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.2e-97 359.0 345 57.4
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 5.5e-97 358.6 344 59.0
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 5.5e-97 358.6 336 58.9
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 2.1e-96 356.7 341 56.3
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 3.6e-96 355.9 326 64.1
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 4.7e-96 355.5 337 57.6
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 6.1e-96 355.1 333 58.3
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.4e-95 354.0 345 57.1
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.8e-95 353.6 325 57.5
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 2.3e-95 353.2 333 60.7
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 3.0e-95 352.8 330 58.2
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 5.2e-95 352.1 330 57.3
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 6.8e-95 351.7 345 55.7
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 1.2e-94 350.9 339 56.9
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.5e-94 350.5 327 59.0
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.6e-94 349.7 345 53.9
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 2.6e-94 349.7 341 57.2
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.4e-94 349.4 353 55.2
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 5.7e-94 348.6 341 55.7
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 7.5e-94 348.2 331 57.7
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.3e-93 347.4 357 55.5
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 3.7e-93 345.9 332 57.8
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 8.3e-93 344.7 352 54.5
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 2.4e-92 343.2 337 56.7
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 4.1e-92 342.4 343 55.1
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 5.4e-92 342.0 360 56.4
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.2e-91 340.9 347 53.3
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 3.5e-91 339.3 335 55.8
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 5.9e-91 338.6 347 54.8
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 5.9e-91 338.6 349 57.0
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.3e-90 337.4 349 54.4
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.7e-90 337.0 352 53.1
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.2e-90 336.7 341 52.8
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 3.8e-90 335.9 336 52.7
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 5.0e-90 335.5 357 53.5
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.5e-90 335.1 337 53.1
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.5e-89 333.2 337 52.2
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 2.5e-89 333.2 330 54.8
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.6e-88 329.3 353 52.1
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 3.6e-88 329.3 351 53.0
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 4.7e-88 328.9 345 53.3
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 6.1e-88 328.6 333 56.2
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 6.1e-88 328.6 338 53.0
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.8e-87 327.0 381 50.1
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.3e-87 326.6 353 52.1
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 4.0e-87 325.9 327 59.6
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.5e-86 323.9 333 54.1
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 7.5e-86 321.6 352 51.4
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 4.9e-85 318.9 329 53.5
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 8.3e-85 318.2 340 50.3
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 5.4e-84 315.5 359 49.6
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 5.4e-84 315.5 359 49.6
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 3.5e-83 312.8 335 54.6
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.3e-82 310.8 359 52.4
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.1e-81 307.8 320 57.5
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.5e-81 307.4 381 49.1
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 3.0e-79 299.7 324 52.2
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.2e-79 298.9 343 53.1
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.7e-74 283.9 339 46.0
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.8e-72 276.6 368 45.1
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 3.5e-67 259.6 341 48.1
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 4.6e-67 259.2 340 45.9
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.5e-65 254.2 164 72.0
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 1.5e-62 244.2 345 42.6
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 2.0e-62 243.8 298 48.0
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.7e-61 240.7 171 65.5
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 2.2e-61 240.4 213 55.4
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 7.8e-59 231.9 341 41.1
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 6.6e-58 228.8 239 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 7.3e-57 225.3 343 39.1
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 9.5e-57 224.9 347 39.2
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 3.6e-56 223.0 325 44.3
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 2.0e-54 217.2 321 38.6
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 8.4e-53 211.8 131 74.0
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 9.2e-52 208.4 307 45.6
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.1e-49 201.4 374 35.0
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 8.1e-48 195.3 175 52.0
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 8.4e-45 185.3 131 65.6
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.4e-44 184.5 307 43.3
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.5e-41 174.5 208 50.0
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 9.9e-38 161.8 366 31.4
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 3.7e-32 143.3 310 30.0
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 5.3e-31 139.4 316 33.9
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.8e-29 133.3 88 69.3
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 3.5e-27 126.7 131 59.5
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.8e-26 124.4 239 39.7
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 3.3e-25 120.2 137 53.3
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.6e-24 117.9 143 42.7
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 8.4e-21 105.5 61 80.3
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.8e-18 97.8 90 57.8
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.3e-18 97.4 86 51.2
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 8.2e-16 89.0 59 71.2
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.1e-15 86.7 133 42.9
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 2.3e-10 70.9 96 50.0
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 1.1e-09 68.6 114 30.7
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 7.4e-09 65.9 203 31.5
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 9.7e-09 65.5 58 55.2


User provided reference genes

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