Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 5.1e-224 780.8 401 100.0
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 1.0e-176 623.6 392 83.9
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.2e-145 520.4 395 67.1
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.4e-141 506.1 401 65.8
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.5e-138 496.9 415 63.4
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 3.6e-137 492.3 401 64.8
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 6.8e-136 488.0 394 63.7
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 2.9e-134 482.6 401 62.3
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.8e-133 479.9 401 61.6
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 2.7e-132 476.1 403 61.5
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 3.5e-132 475.7 414 62.1
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.0e-131 474.2 405 61.7
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.4e-128 463.8 401 61.1
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.2e-127 460.7 411 59.9
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.0e-127 459.9 404 61.1
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 4.4e-127 458.8 443 57.3
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 5.8e-127 458.4 404 59.4
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 7.5e-127 458.0 394 61.2
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 7.5e-127 458.0 399 61.2
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.3e-126 457.2 406 57.9
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.3e-126 457.2 437 56.5
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 4.9e-126 455.3 404 59.4
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 4.9e-126 455.3 357 65.5
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.1e-125 454.1 403 59.6
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.4e-125 453.8 397 58.7
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.2e-125 452.6 404 60.4
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 7.0e-125 451.4 408 58.1
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.7e-123 446.8 434 56.2
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 2.3e-123 446.4 416 57.7
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 3.0e-123 446.0 407 59.5
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 5.0e-123 445.3 405 58.0
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 5.0e-123 445.3 411 59.1
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.1e-122 444.1 398 57.8
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.5e-122 443.7 402 57.7
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.9e-122 443.4 407 58.0
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.5e-122 443.0 405 59.0
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.5e-122 443.0 479 53.0
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 5.6e-122 441.8 402 57.2
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.6e-121 440.3 451 55.2
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 8.1e-121 438.0 407 56.5
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 8.1e-121 438.0 405 56.8
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 4.0e-120 435.6 404 58.4
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 5.2e-120 435.3 407 57.0
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 6.8e-120 434.9 414 58.0
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 8.9e-120 434.5 410 55.6
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 3.4e-119 432.6 413 55.4
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 7.5e-119 431.4 405 55.6
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 9.8e-119 431.0 404 55.9
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.7e-118 430.3 402 57.0
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 8.3e-118 427.9 413 58.8
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.3e-118 427.9 399 57.4
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.9e-117 426.8 407 55.5
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 8.6e-115 417.9 371 60.9
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 4.4e-111 405.6 414 55.8
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.7e-110 403.7 376 57.4
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 1.2e-108 397.5 305 65.2
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.3e-107 394.0 533 45.2
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.3e-107 394.0 397 53.4
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 3.9e-107 392.5 428 51.9
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.1e-106 391.0 395 55.7
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 3.3e-106 389.4 406 51.7
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.6e-105 386.0 404 51.5
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.6e-100 369.0 316 63.9
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 3.9e-99 365.9 413 50.4
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 4.3e-98 362.5 422 50.2
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.3e-98 361.7 322 57.1
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.1e-97 360.1 291 62.9
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 2.1e-97 360.1 403 50.9
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 4.5e-95 352.4 303 61.7
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.9e-93 347.1 291 59.8
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.2e-93 346.3 407 48.9
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 4.2e-93 345.9 330 58.5
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.2e-92 344.4 287 59.9
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.3e-91 340.9 295 63.4
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.1e-91 339.0 315 58.1
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 2.1e-89 333.6 405 48.1
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 6.2e-89 332.0 329 55.9
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 4.0e-88 329.3 422 46.2
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 9.0e-88 328.2 316 57.9
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.2e-86 323.6 302 59.3
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 2.4e-85 320.1 446 45.7
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 3.5e-84 316.2 430 44.9
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 4.6e-84 315.8 306 55.6
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 2.3e-83 313.5 305 57.0
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.7e-83 311.6 302 56.0
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.6e-82 308.9 326 54.9
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 4.8e-81 305.8 442 43.0
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 7.6e-79 298.5 311 52.4
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.2e-78 297.0 283 58.7
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.1e-77 294.7 276 57.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.2e-77 292.7 424 42.0
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.7e-76 290.0 576 37.0
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 3.0e-75 286.6 465 39.8
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 3.9e-75 286.2 439 43.7
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.8e-72 277.3 308 51.3
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 5.9e-71 272.3 259 54.1
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.4e-69 267.7 296 52.7
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.2e-68 264.6 411 41.8
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 3.1e-64 250.0 300 45.0
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.0e-59 235.0 154 74.7
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 6.9e-56 222.2 312 43.9
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.7e-54 217.6 265 43.8
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 2.2e-54 217.2 299 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.2e-52 211.5 319 41.4
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.8e-51 207.6 258 45.3
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 8.8e-51 205.3 408 36.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 9.1e-48 195.3 190 54.7
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.2e-44 184.9 238 45.0
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.8e-40 171.0 284 40.1
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.2e-39 168.3 99 78.8
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 3.8e-38 163.3 103 74.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.0e-34 151.0 353 31.7
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.4e-32 144.1 83 78.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.5e-31 139.8 285 32.3
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 4.2e-29 133.3 85 75.3
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.0e-23 114.4 88 63.6
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 9.5e-21 105.5 221 34.4
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 1.0e-19 102.1 65 75.4
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.2e-18 98.6 63 73.0
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 5.7e-18 96.3 128 42.2
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 3.5e-15 87.0 87 50.6
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.1e-13 82.0 61 60.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 3.3e-13 80.5 248 29.0
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.2e-10 72.0 70 50.0
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.6e-10 70.9 87 48.3
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 5.4e-08 63.2 59 61.0
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.3e-06 58.5 74 44.6


User provided reference genes

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