Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 7.2e-162 573.9 308 100.0
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 6.8e-144 514.2 311 89.1
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.6e-129 465.3 317 82.3
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 6.4e-126 454.5 315 80.3
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 4.5e-87 325.5 311 65.0
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 4.3e-74 282.3 313 56.2
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 4.3e-74 282.3 313 55.9
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.9e-70 269.6 326 54.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 5.0e-70 268.9 320 55.0
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.2e-69 266.2 294 56.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.2e-68 264.2 294 55.1
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.6e-68 263.8 317 53.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.6e-68 263.8 294 55.1
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 3.3e-66 256.1 288 56.6
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 3.7e-65 252.7 320 53.4
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 8.2e-65 251.5 309 55.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 3.1e-64 249.6 323 53.3
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.2e-63 247.7 299 53.8
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-62 244.2 304 53.9
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 3.2e-61 239.6 268 53.4
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 3.2e-61 239.6 294 55.1
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 7.2e-61 238.4 301 51.8
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 7.2e-61 238.4 273 54.6
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 9.4e-61 238.0 294 51.0
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.8e-59 233.8 283 53.7
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.0e-58 230.3 305 49.2
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-57 227.6 203 65.0
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.3e-57 227.6 299 52.5
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 3.7e-57 226.1 203 64.5
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 8.2e-57 224.9 261 55.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.1e-56 224.6 308 49.7
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.4e-56 224.2 327 48.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.1e-56 223.0 292 50.3
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.1e-56 222.6 260 53.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.1e-56 222.6 253 54.5
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 5.3e-56 222.2 283 51.2
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 7.0e-56 221.9 265 55.1
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.2e-55 221.1 321 48.0
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.0e-55 220.3 256 55.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.5e-55 219.5 214 61.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 4.5e-55 219.2 176 70.5
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 5.9e-55 218.8 275 50.5
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 7.7e-55 218.4 289 50.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.7e-54 217.2 305 47.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 2.2e-54 216.9 316 48.4
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.9e-54 216.5 238 55.5
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.9e-54 216.5 292 51.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 6.5e-54 215.3 290 49.0
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.5e-54 215.3 184 65.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.1e-53 214.5 309 48.9
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.5e-53 214.2 240 55.4
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.9e-53 213.8 256 54.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 4.2e-53 212.6 259 54.1
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.6e-52 210.7 274 51.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.6e-52 210.7 291 49.1
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 3.6e-52 209.5 257 52.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 4.7e-52 209.1 272 50.7
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 4.7e-52 209.1 314 45.2
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 4.7e-52 209.1 272 50.4
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 6.1e-52 208.8 293 47.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.0e-51 208.0 276 51.4
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.0e-51 208.0 269 48.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 2.3e-51 206.8 272 50.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.0e-51 206.5 279 47.3
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.0e-51 206.5 303 47.5
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.2e-51 205.7 266 49.2
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.3e-50 203.0 297 45.1
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 4.4e-50 202.6 227 55.9
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 5.7e-50 202.2 232 53.9
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.7e-50 202.2 222 53.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 2.2e-49 200.3 281 50.5
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 4.8e-49 199.1 190 60.0
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 6.3e-49 198.7 259 49.8
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.3e-49 198.7 316 43.7
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 8.3e-49 198.4 190 58.4
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.3e-49 198.4 316 43.7
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.4e-48 197.6 299 47.5
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.8e-48 197.2 232 50.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.8e-48 197.2 232 50.0
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 2.4e-48 196.8 194 56.7
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.1e-48 196.4 239 50.6
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 5.3e-48 195.7 249 49.0
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 5.3e-48 195.7 247 52.2
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 5.3e-48 195.7 230 52.2
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 7.0e-48 195.3 284 47.2
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.2e-47 194.5 249 48.6
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.7e-47 193.4 269 48.7
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.7e-47 191.8 184 60.9
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.0e-46 191.4 249 48.2
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.3e-46 191.0 276 46.7
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.3e-46 191.0 276 46.7
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-46 191.0 264 50.0
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.3e-46 191.0 311 43.1
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.3e-46 191.0 210 57.1
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.7e-46 190.7 315 44.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.7e-46 190.7 229 50.2
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.2e-46 190.3 230 53.5
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 5.0e-46 189.1 293 46.1
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 8.5e-46 188.3 280 46.4
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.5e-45 187.6 290 44.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.9e-45 187.2 215 56.3
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.7e-44 183.3 203 53.2
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.7e-44 183.3 376 40.2
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.3e-43 180.3 292 44.5
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.0e-43 179.5 160 62.5
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 8.8e-43 178.3 148 69.6
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 7.5e-42 175.3 285 43.9
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 7.5e-42 175.3 139 69.8
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 6.3e-41 172.2 248 49.2
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 6.3e-41 172.2 368 37.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.1e-40 171.4 244 46.3
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.4e-40 171.0 270 44.8
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 4.1e-40 169.5 275 44.4
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 4.1e-40 169.5 252 46.0
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 9.1e-40 168.3 422 34.6
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 4.2e-37 159.5 133 68.4
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 1.2e-36 157.9 199 48.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 3.6e-36 156.4 150 62.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 6.1e-36 155.6 147 59.9
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 8.0e-36 155.2 247 41.7
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.8e-35 154.1 118 72.0
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 4.0e-35 152.9 188 50.5
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 6.3e-33 145.6 201 45.3
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 8.3e-33 145.2 114 75.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-32 144.8 223 48.0
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 9.2e-32 141.7 148 56.8
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 6.6e-30 135.6 154 52.6
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.1e-29 134.8 217 45.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 2.5e-29 133.7 184 48.4
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.4e-27 127.9 96 74.0
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 5.2e-27 125.9 150 54.7
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.6e-23 112.8 142 49.3
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.6e-23 112.8 99 65.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.1e-20 104.0 97 58.8
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 7.5e-18 95.5 114 48.2
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 9.8e-18 95.1 250 34.8
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-16 91.7 62 77.4
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-16 91.7 82 64.6
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.4e-16 90.5 61 80.3
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.6e-15 87.8 150 37.3
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 3.0e-14 83.6 94 45.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.5e-13 80.5 82 54.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.6e-13 79.3 234 31.6
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.1e-12 77.4 97 54.6
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.3e-11 73.9 46 82.6
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.8e-11 72.4 49 81.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.9e-11 72.0 165 41.2
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.2e-08 63.5 134 35.8
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.5e-07 60.1 215 29.8


User provided reference genes

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