Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G069900 Populus trichocarpa HOM05D008049 ORTHO05D010198 1.8e-152 542.7 305 100.0
CiPaw.03G116500 Carya illinoinensis HOM05D008049 ORTHO05D010198 3.8e-78 295.8 313 56.2
Cpa.g.sc37.30 Carica papaya HOM05D008049 ORTHO05D010198 4.3e-74 282.3 312 55.1
Ciclev10002216m.g Citrus clementina HOM05D008049 ORTHO05D010198 5.6e-74 282.0 305 57.0
Atru.chr4.1095 Acer truncatum HOM05D008049 ORTHO05D010198 8.1e-73 278.1 306 55.9
Atru.chr4.1100 Acer truncatum HOM05D008049 ORTHO05D010198 8.1e-73 278.1 306 55.9
MD15G1137300 Malus domestica HOM05D008049 ORTHO05D010198 3.1e-72 276.2 309 59.2
Dinv30334 Davidia involucrata HOM05D008049 ORTHO05D010198 5.8e-71 271.9 324 52.5
RcHm_v2.0_Chr2g0123171 Rosa chinensis HOM05D008049 ORTHO05D010198 4.9e-70 268.9 312 55.4
QL10p040433 Quercus lobata HOM05D008049 ORTHO05D010198 1.1e-69 267.7 329 52.0
Prupe.4G279900 Prunus persica HOM05D008049 ORTHO05D010198 3.2e-69 266.2 314 52.9
Hma1.2p1_0134F.1_g061550 Hydrangea macrophylla HOM05D008049 ORTHO05D010198 7.1e-69 265.0 325 60.0
TWI31G1063 Tripterygium wilfordii HOM05D008049 ORTHO05D010198 2.1e-68 263.5 316 53.5
TAR381G0470 Trochodendron aralioides HOM05D008049 ORTHO05D010198 2.1e-68 263.5 317 57.7
TWI79G0517 Tripterygium wilfordii HOM05D008049 ORTHO05D010198 1.8e-67 260.4 316 52.2
C09p68210 Brassica napus HOM05D008049 ORTHO05D010198 8.7e-67 258.1 313 51.4
BolC9t59570H Brassica oleracea HOM05D008049 ORTHO05D010198 2.5e-66 256.5 312 51.0
AL6G19520 Arabidopsis lyrata HOM05D008049 ORTHO05D010198 3.3e-66 256.1 309 51.5
FAN26G0656 Fragaria x ananassa HOM05D008049 ORTHO05D010198 3.3e-66 256.1 305 52.8
FAN26G2415 Fragaria x ananassa HOM05D008049 ORTHO05D010198 3.3e-66 256.1 305 52.8
BraA10t44851Z Brassica rapa HOM05D008049 ORTHO05D010198 1.6e-65 253.8 312 51.0
PSO528G0188 Papaver somniferum HOM05D008049 ORTHO05D010198 1.6e-65 253.8 246 61.4
Actinidia16520 Actinidia chinensis HOM05D008049 ORTHO05D010198 2.8e-65 253.1 327 56.6
AT5G08770 Arabidopsis thaliana HOM05D008049 ORTHO05D010198 3.7e-65 252.7 311 50.5
Thhalv10014201m.g Eutrema salsugineum HOM05D008049 ORTHO05D010198 4.8e-65 252.3 319 54.5
A10p28010 Brassica napus HOM05D008049 ORTHO05D010198 6.2e-65 251.9 313 51.1
CARHR204240 Cardamine hirsuta HOM05D008049 ORTHO05D010198 6.2e-65 251.9 315 49.8
FvH4_1g25250 Fragaria vesca HOM05D008049 ORTHO05D010198 8.1e-65 251.5 305 52.5
Aa31LG3G17800 Aethionema arabicum HOM05D008049 ORTHO05D010198 1.1e-64 251.1 315 49.2
Sabra05G0056900 Salix brachista HOM05D008049 ORTHO05D010198 2.4e-64 250.0 123 95.9
THA.LOC104818414 Tarenaya hassleriana HOM05D008049 ORTHO05D010198 4.0e-64 249.2 317 53.9
Sp6g34110 Schrenkiella parvula HOM05D008049 ORTHO05D010198 9.0e-64 248.1 313 49.5
Carub.0006s0774 Capsella rubella HOM05D008049 ORTHO05D010198 2.6e-63 246.5 317 49.5
PGR102G0265 Punica granatum HOM05D008049 ORTHO05D010198 3.4e-63 246.1 310 51.9
Thecc.01G140900 Theobroma cacao HOM05D008049 ORTHO05D010198 1.7e-62 243.8 245 58.0
FAN19G2909 Fragaria x ananassa HOM05D008049 ORTHO05D010198 4.9e-62 242.3 303 51.8
BcaB08g37227 Brassica carinata HOM05D008049 ORTHO05D010198 2.4e-61 240.0 330 49.7
DCAR_013179 Daucus carota HOM05D008049 ORTHO05D010198 5.5e-61 238.8 311 48.9
Duzib187G0110 Durio zibethinus HOM05D008049 ORTHO05D010198 1.2e-60 237.7 243 56.4
PSO170G0957 Papaver somniferum HOM05D008049 ORTHO05D010198 1.2e-60 237.7 314 51.3
Medtr3g096940 Medicago truncatula HOM05D008049 ORTHO05D010198 1.8e-59 233.8 306 48.7
Phvul.009G152600 Phaseolus vulgaris HOM05D008049 ORTHO05D010198 5.1e-59 232.3 308 54.5
Duzib147G0405 Durio zibethinus HOM05D008049 ORTHO05D010198 1.5e-58 230.7 319 47.6
arahy.Tifrunner.gnm1.ann1.M4SWJY Arachis hypogaea HOM05D008049 ORTHO05D010198 4.8e-57 225.7 325 51.4
Glyma.04G208100 Glycine max HOM05D008049 ORTHO05D010198 4.8e-57 225.7 308 52.9
Sc09g0002140 Simmondsia chinensis HOM05D008049 ORTHO05D010198 6.2e-57 225.3 347 47.3
arahy.Tifrunner.gnm1.ann1.WZNZ1Z Arachis hypogaea HOM05D008049 ORTHO05D010198 1.1e-56 224.6 327 51.7
Gorai.012G037400 Gossypium raimondii HOM05D008049 ORTHO05D010198 6.9e-56 221.9 245 54.7
Lj1g0009929 Lotus japonicus HOM05D008049 ORTHO05D010198 6.9e-56 221.9 319 52.0
Glyma.06G157600 Glycine max HOM05D008049 ORTHO05D010198 2.9e-54 216.5 306 52.3
Nn5g28352 Nelumbo nucifera HOM05D008049 ORTHO05D010198 4.2e-53 212.6 304 48.7
Migut.H00830 Erythranthe guttata HOM05D008049 ORTHO05D010198 1.5e-50 204.1 314 44.3
VMungo1309G0538 Vigna mungo HOM05D008049 ORTHO05D010198 1.5e-47 194.1 315 47.0
COL.COLO4_12107 Corchorus olitorius HOM05D008049 ORTHO05D010198 3.4e-47 193.0 168 61.9
Lalb_Chr08g0238031 Lupinus albus HOM05D008049 ORTHO05D010198 1.8e-43 180.6 234 49.6
EL10Ac4g09675 Beta vulgaris HOM05D008049 ORTHO05D010198 3.1e-40 169.9 274 44.5
unitig_899.g15147 Utricularia gibba HOM05D008049 ORTHO05D010198 9.1e-40 168.3 223 49.8
AUR62006889 Chenopodium quinoa HOM05D008049 ORTHO05D010198 3.0e-35 153.3 174 50.6
Gohir.A05G382200 Gossypium hirsutum HOM05D008049 ORTHO05D010198 2.2e-33 147.1 241 40.7
MD15G1137000 Malus domestica HOM05D008049 ORTHO05D010198 2.8e-33 146.7 152 55.9
Gohir.D04G033000 Gossypium hirsutum HOM05D008049 ORTHO05D010198 4.8e-33 146.0 150 54.7
CDE04G3132 Ceratophyllum demersum HOM05D008049 ORTHO05D010198 2.6e-26 123.6 290 32.8
CDE07G0304 Ceratophyllum demersum HOM05D008049 ORTHO05D010198 1.2e-23 114.8 282 32.6
Nitab4.5_0000905g0120 Nicotiana tabacum HOM05D008049 ORTHO05D010198 2.2e-22 110.5 173 43.9
Psat5g058560 Pisum sativum HOM05D008049 ORTHO05D010198 7.2e-21 105.5 92 62.0
TPR.G7867 Trifolium pratense HOM05D008049 ORTHO05D010198 1.6e-20 104.4 171 53.8
AUR62000540 Chenopodium quinoa HOM05D008049 ORTHO05D010198 2.7e-20 103.6 95 58.9
SGA_v2.0_scaffold20G08957 Striga asiatica HOM05D008049 ORTHO05D010198 2.7e-20 103.6 110 50.0
MBI06_g26010_MAGBIO Magnolia biondii HOM05D008049 ORTHO05D010198 3.3e-18 96.7 167 40.7
Ca_16998_v3 Cicer arietinum L. HOM05D008049 ORTHO05D010198 1.2e-07 61.6 54 64.8
Ca_17026_v3 Cicer arietinum L. HOM05D008049 ORTHO05D010198 1.2e-07 61.6 54 64.8
Peaxi162Scf00925g00015 Petunia axillaris HOM05D008049 ORTHO05D010198 1.6e-07 61.2 85 41.2
arahy.Tifrunner.gnm1.ann1.P087XE Arachis hypogaea HOM05D008049 ORTHO05D010198 3.8e-06 56.6 40 70.0


User provided reference genes

Program Settings