Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G068300 Populus trichocarpa HOM05D004009 ORTHO05D004617 9.8e-30 132.9 71 100.0
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 7.0e-20 100.1 59 86.4
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 4.6e-19 97.4 61 78.7
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 4.6e-19 97.4 61 78.7
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 4.6e-19 97.4 59 83.1
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 7.8e-19 96.7 60 80.0
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 7.8e-19 96.7 59 79.7
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 1.3e-18 95.9 60 80.0
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 1.3e-18 95.9 69 71.0
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 3.0e-18 94.7 59 81.4
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 3.9e-18 94.4 60 80.0
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 3.9e-18 94.4 58 81.0
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 5.1e-18 94.0 58 81.0
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 5.1e-18 94.0 58 81.0
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 6.6e-18 93.6 59 79.7
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 6.6e-18 93.6 59 79.7
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 6.6e-18 93.6 61 77.0
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 8.6e-18 93.2 57 82.5
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.1e-17 92.8 58 79.3
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.5e-17 92.4 59 76.3
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.9e-17 92.0 60 75.0
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 1.9e-17 92.0 61 75.4
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 2.5e-17 91.7 58 77.6
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 3.3e-17 91.3 60 76.7
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.3e-17 91.3 59 76.3
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 3.3e-17 91.3 59 81.4
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 3.3e-17 91.3 59 76.3
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.3e-17 91.3 59 76.3
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 3.3e-17 91.3 59 76.3
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 3.3e-17 91.3 58 77.6
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 3.3e-17 91.3 58 79.3
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 4.3e-17 90.9 59 78.0
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 4.3e-17 90.9 59 76.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 4.3e-17 90.9 57 78.9
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 4.3e-17 90.9 57 78.9
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 4.3e-17 90.9 58 79.3
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 5.6e-17 90.5 58 75.9
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 5.6e-17 90.5 58 77.6
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 5.6e-17 90.5 59 76.3
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 7.3e-17 90.1 59 74.6
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 9.5e-17 89.7 59 76.3
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 9.5e-17 89.7 57 78.9
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 9.5e-17 89.7 58 79.3
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.2e-16 89.4 59 78.0
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.2e-16 89.4 58 77.6
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 1.2e-16 89.4 60 78.3
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 1.2e-16 89.4 59 76.3
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 1.2e-16 89.4 59 76.3
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 1.6e-16 89.0 60 73.3
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 1.6e-16 89.0 60 73.3
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 1.6e-16 89.0 59 74.6
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 2.1e-16 88.6 58 75.9
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 2.1e-16 88.6 59 72.9
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 2.1e-16 88.6 57 75.4
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 2.8e-16 88.2 64 70.3
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.8e-16 88.2 59 76.3
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 3.6e-16 87.8 58 75.9
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 3.6e-16 87.8 58 74.1
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.6e-16 87.8 67 67.2
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 3.6e-16 87.8 59 76.3
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 3.6e-16 87.8 59 74.6
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 4.7e-16 87.4 59 74.6
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 4.7e-16 87.4 60 73.3
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 4.7e-16 87.4 58 75.9
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 6.2e-16 87.0 65 66.2
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 6.2e-16 87.0 57 77.2
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 6.2e-16 87.0 59 72.9
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.2e-16 87.0 59 72.9
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 8.1e-16 86.7 57 77.2
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 8.1e-16 86.7 59 72.9
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.1e-15 86.3 57 73.7
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.1e-15 86.3 58 75.9
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 1.1e-15 86.3 60 75.0
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 1.1e-15 86.3 59 74.6
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 1.1e-15 86.3 60 75.0
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.4e-15 85.9 62 67.7
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 1.4e-15 85.9 54 75.9
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.4e-15 85.9 61 68.9
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 1.4e-15 85.9 59 71.2
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 1.8e-15 85.5 57 75.4
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 1.8e-15 85.5 59 74.6
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 1.8e-15 85.5 61 73.8
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 1.8e-15 85.5 59 71.2
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.3e-15 85.1 59 71.2
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 2.3e-15 85.1 58 75.9
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 3.1e-15 84.7 58 72.4
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 4.0e-15 84.3 59 69.5
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.0e-15 84.3 59 69.5
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 4.0e-15 84.3 57 77.2
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 4.0e-15 84.3 59 72.9
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 5.2e-15 84.0 58 72.4
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 5.2e-15 84.0 57 71.9
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 6.8e-15 83.6 59 67.8
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 8.9e-15 83.2 61 68.9
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 8.9e-15 83.2 59 71.2
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 8.9e-15 83.2 59 71.2
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 8.9e-15 83.2 58 72.4
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 8.9e-15 83.2 59 71.2
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 8.9e-15 83.2 58 74.1
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 8.9e-15 83.2 57 73.7
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 8.9e-15 83.2 57 73.7
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-14 82.8 61 65.6
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.5e-14 82.4 60 68.3
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 1.5e-14 82.4 59 71.2
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 1.5e-14 82.4 59 69.5
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 1.5e-14 82.4 59 69.5
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 2.0e-14 82.0 61 65.6
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 2.0e-14 82.0 58 72.4
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 3.4e-14 81.3 57 73.7
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 3.4e-14 81.3 57 73.7
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 3.4e-14 81.3 54 72.2
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 3.4e-14 81.3 58 67.2
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.4e-14 80.9 59 69.5
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 7.5e-14 80.1 57 71.9
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 7.5e-14 80.1 54 72.2
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.3e-13 79.3 59 67.8
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 1.7e-13 79.0 54 70.4
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 1.7e-13 79.0 57 68.4
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.2e-13 78.6 58 69.0
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 3.7e-13 77.8 59 69.5
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 3.7e-13 77.8 59 69.5
HanXRQChr08g0232101 Helianthus annuus HOM05D004009 ORTHO05D004617 4.9e-13 77.4 54 70.4
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.4e-13 77.0 59 62.7
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 6.4e-13 77.0 57 68.4
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 1.1e-12 76.3 57 70.2
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 4.1e-12 74.3 57 66.7
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.1e-12 73.6 60 60.0
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.1e-11 72.0 52 71.2
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.7e-11 71.6 51 68.6
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 7.3e-09 63.5 51 62.7
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.8e-08 61.6 44 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 3.6e-08 61.2 46 58.7
Medtr5g023360 Medicago truncatula HOM05D004009 ORTHO05D004617 6.2e-08 60.5 48 64.6
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 1.8e-07 58.9 40 70.0
FAN01G0626 Fragaria x ananassa HOM05D004009 ORTHO05D004617 6.8e-07 57.0 35 71.4
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 6.8e-07 57.0 36 77.8
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 8.9e-07 56.6 36 77.8
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 8.9e-07 56.6 36 77.8
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 2.0e-06 55.5 37 73.0
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 2.6e-06 55.1 37 73.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 5.8e-06 53.9 36 75.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.8e-06 53.9 36 75.0
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 5.8e-06 53.9 37 73.0
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 9.9e-06 53.1 35 74.3


User provided reference genes

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