Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 2.5e-37 158.7 105 100.0
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.2e-20 103.2 53 92.5
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 1.2e-20 103.2 60 93.3
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 1.0e-19 100.1 68 82.4
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.1e-16 90.1 55 78.2
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 3.1e-16 88.6 55 78.2
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 3.1e-16 88.6 55 78.2
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 4.1e-16 88.2 83 59.0
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 5.4e-16 87.8 50 86.0
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 7.0e-16 87.4 57 77.2
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 7.0e-16 87.4 86 57.0
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 2.0e-15 85.9 57 75.4
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.7e-15 85.5 49 81.6
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 2.7e-15 85.5 56 76.8
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 2.7e-15 85.5 56 76.8
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 3.5e-15 85.1 57 75.4
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 3.5e-15 85.1 57 75.4
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 3.5e-15 85.1 57 75.4
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.5e-15 85.1 57 75.4
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 4.5e-15 84.7 79 57.0
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 5.9e-15 84.3 80 56.2
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 7.7e-15 84.0 51 78.4
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 7.7e-15 84.0 50 76.0
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 1.0e-14 83.6 47 83.0
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 1.0e-14 83.6 74 68.9
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.0e-14 83.6 65 66.2
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.3e-14 83.2 46 84.8
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.3e-14 83.2 46 84.8
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 1.7e-14 82.8 71 59.2
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 2.2e-14 82.4 80 62.5
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 2.2e-14 82.4 53 73.6
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 2.9e-14 82.0 44 84.1
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.9e-14 82.0 44 84.1
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.9e-14 82.0 44 84.1
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.9e-14 82.0 57 73.7
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 3.8e-14 81.6 58 70.7
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 3.8e-14 81.6 60 70.0
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.8e-14 81.6 71 64.8
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 5.0e-14 81.3 45 82.2
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 5.0e-14 81.3 45 82.2
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 6.5e-14 80.9 75 64.0
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 8.5e-14 80.5 75 64.0
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 8.5e-14 80.5 48 75.0
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 8.5e-14 80.5 80 55.0
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 1.1e-13 80.1 77 59.7
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.5e-13 79.7 78 57.7
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 1.5e-13 79.7 48 75.0
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 1.9e-13 79.3 47 74.5
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.9e-13 79.3 76 53.9
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 2.5e-13 79.0 41 85.4
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 3.2e-13 78.6 48 75.0
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 3.2e-13 78.6 45 82.2
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 3.2e-13 78.6 46 76.1
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 3.2e-13 78.6 48 75.0
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 4.2e-13 78.2 83 61.4
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 4.2e-13 78.2 65 61.5
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 7.2e-13 77.4 43 83.7
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 7.2e-13 77.4 43 76.7
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 1.6e-12 76.3 72 58.3
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.6e-12 76.3 46 73.9
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.6e-12 76.3 45 75.6
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 1.6e-12 76.3 41 82.9
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 1.6e-12 76.3 67 62.7
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 2.7e-12 75.5 50 74.0
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 2.7e-12 75.5 75 60.0
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 2.7e-12 75.5 74 54.1
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 4.7e-12 74.7 43 81.4
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 4.7e-12 74.7 43 81.4
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.7e-12 74.7 46 73.9
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.7e-12 74.7 45 73.3
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 6.1e-12 74.3 69 62.3
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 1.0e-11 73.6 54 66.7
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.0e-11 73.6 53 66.0
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 2.3e-11 72.4 45 75.6
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 3.0e-11 72.0 65 55.4
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 3.0e-11 72.0 34 91.2
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.0e-11 72.0 34 91.2
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 4.0e-11 71.6 35 88.6
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 5.2e-11 71.2 67 62.7
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 5.2e-11 71.2 51 72.5
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 5.2e-11 71.2 49 71.4
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.2e-10 70.1 45 75.6
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 1.5e-10 69.7 34 85.3
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.0e-10 69.3 41 78.0
Manes.12G158900 Manihot esculenta HOM05D006246 ORTHO05D007932 2.0e-10 69.3 58 65.5
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 2.6e-10 68.9 63 60.3
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 4.4e-10 68.2 57 61.4
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 5.7e-10 67.8 34 85.3
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 7.5e-10 67.4 66 54.5
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 9.8e-10 67.0 76 52.6
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 1.3e-09 66.6 49 67.3
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 1.3e-09 66.6 81 48.1
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 2.8e-09 65.5 43 74.4
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 3.7e-09 65.1 57 56.1
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 6.3e-09 64.3 54 59.3
Pp3c16_16780 Physcomitrium patens HOM05D006246 ORTHO05D007932 1.1e-08 63.5 47 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 4.1e-08 61.6 49 61.2
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.4e-08 61.2 40 70.0
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 5.4e-08 61.2 42 69.0
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 2.7e-07 58.9 50 66.0
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 2.7e-07 58.9 50 66.0
Nn5g27268 Nelumbo nucifera HOM05D006246 ORTHO05D007932 3.5e-07 58.5 34 79.4
Gohir.A05G410800 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-06 54.7 37 70.3
Gohir.D04G005100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-06 54.7 37 70.3
Gorai.012G006400 Gossypium raimondii HOM05D006246 ORTHO05D007932 5.0e-06 54.7 37 70.3


User provided reference genes

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